Detailed information    

insolico Bioinformatically predicted

Overview

Name   chpA   Type   Regulator
Locus tag   HWU15_RS01970 Genome accession   NZ_CP058281
Coordinates   403992..404366 (-) Length   124 a.a.
NCBI ID   WP_015086992.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hk711     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 398992..409366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWU15_RS01950 pssA 400141..400854 (-) 714 WP_115044601.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  HWU15_RS01955 - 400844..401092 (-) 249 WP_237015756.1 hypothetical protein -
  HWU15_RS01960 ftsH 401095..402993 (-) 1899 WP_237015757.1 ATP-dependent zinc metalloprotease FtsH -
  HWU15_RS01965 prmA 403002..403979 (-) 978 WP_237016029.1 50S ribosomal protein L11 methyltransferase -
  HWU15_RS01970 chpA 403992..404366 (-) 375 WP_015086992.1 chemotaxis response regulator CheY Regulator
  HWU15_RS01975 - 404657..405259 (+) 603 WP_021307802.1 outer membrane protein -
  HWU15_RS01985 - 405391..405798 (-) 408 WP_237015758.1 hypothetical protein -
  HWU15_RS01990 - 405801..406043 (-) 243 WP_000944388.1 PP0621 family protein -
  HWU15_RS01995 rsmG 406037..406573 (-) 537 WP_237015759.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  HWU15_RS02000 queA 406570..407607 (-) 1038 WP_237015760.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  HWU15_RS02005 tatC 407608..408357 (-) 750 WP_237015761.1 twin-arginine translocase subunit TatC -
  HWU15_RS02010 tatB 408350..408826 (-) 477 WP_096482595.1 Sec-independent protein translocase protein TatB -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13833.13 Da        Isoelectric Point: 4.6381

>NTDB_id=404297 HWU15_RS01970 WP_015086992.1 403992..404366(-) (chpA) [Helicobacter pylori strain Hk711]
MKLLVVDDSSTMRRIIGNTLSRLGYEDILEAEHGVEALEKLNANPDIKVLITDWNMPEMNGLDLVIKVRADERFKEIPII
MITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGTND

Nucleotide


Download         Length: 375 bp        

>NTDB_id=404297 HWU15_RS01970 WP_015086992.1 403992..404366(-) (chpA) [Helicobacter pylori strain Hk711]
TTGAAACTACTGGTAGTAGATGATAGCTCAACTATGAGGAGAATTATTGGAAACACACTTTCACGCTTAGGCTATGAAGA
TATTTTAGAAGCTGAGCATGGGGTAGAAGCTTTGGAGAAACTAAACGCTAATCCGGACATTAAGGTGCTTATCACAGATT
GGAACATGCCTGAAATGAACGGCTTGGATCTCGTTATAAAGGTGCGTGCAGATGAGCGGTTTAAAGAAATCCCTATTATT
ATGATCACCACAGAGGGCGGTAAGGCTGAGGTCATTACGGCTTTGAAAGCGGGCGTGAATAATTATATTGTGAAACCTTT
TACCCCCCAAGTTTTGAAAGAAAAATTAGAGGTTGTTTTAGGGACAAACGATTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chpA Acinetobacter baumannii strain A118

37.815

95.968

0.363

Multiple sequence alignment