Detailed information NTG0404299

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GMO17_RS21640
• Genome accession: NZ_CP046441
• Coordinates: 4796781..4797653 (+)
• Length: 290 a.a.
• NCBI ID: WP_122347408.1
• Uniprot ID: -
• Organism: Pseudomonas coronafaciens pv. coronafaciens strain B19001
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4791781..4802653

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GMO17_RS21620 (GMO17_21955)	-	4792104..4792691 (-)	588	WP_183136699.1	DUF433 domain-containing protein	-
GMO17_RS21625 (GMO17_21960)	-	4793234..4793638 (-)	405	WP_005895657.1	pilin	-
GMO17_RS21630 (GMO17_21965)	pilB	4793865..4795559 (+)	1695	WP_005895655.1	type IV-A pilus assembly ATPase PilB	Machinery gene
GMO17_RS21635 (GMO17_21970)	pilC	4795562..4796779 (+)	1218	WP_024690386.1	type II secretion system F family protein	Machinery gene
GMO17_RS21640 (GMO17_21975)	pilD	4796781..4797653 (+)	873	WP_122347408.1	prepilin peptidase	Machinery gene
GMO17_RS21645 (GMO17_21980)	coaE	4797650..4798273 (+)	624	WP_122347409.1	dephospho-CoA kinase	-
GMO17_RS21650 (GMO17_21985)	yacG	4798270..4798479 (+)	210	WP_003381207.1	DNA gyrase inhibitor YacG	-
GMO17_RS21655 (GMO17_21990)	-	4798623..4799252 (+)	630	WP_005895647.1	DUF1780 domain-containing protein	-
GMO17_RS21660 (GMO17_21995)	-	4799249..4799782 (+)	534	WP_053481610.1	MOSC domain-containing protein	-
GMO17_RS21665 (GMO17_22000)	-	4800000..4801298 (+)	1299	WP_122311686.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32058.23 Da
• Isoelectric Point: 8.3734

>NTDB_id=404299 GMO17_RS21640 WP_122347408.1 4796781..4797653(+) (pilD) [Pseudomonas coronafaciens pv. coronafaciens strain B19001]
MPLLDLLASSPLAFVTTCCILGLIIGSFLNVVVYRLPIMMERDWKAQSREMLGLPAEQDQPVFNLNRPRSSCPHCAHKIR
PWENLPILSYLLLRGKCSQCKAPISKRYPLVELTCAVLSAYVAWHFGFGWQAAAMLVLSWGLLAMSLIDADHQLLPDSLV
LPLLWLGLIVNAFGLFTSLNDALWGAVAGYLALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTVLLSSLVG
AVLGVIMMRVRRVESGTPIPFGPYLAIAGWIALLWGGQITDSYMQFAGFR

Nucleotide

• Length: 873 bp

>NTDB_id=404299 GMO17_RS21640 WP_122347408.1 4796781..4797653(+) (pilD) [Pseudomonas coronafaciens pv. coronafaciens strain B19001]
ATGCCCCTCCTCGACCTCCTGGCCAGCTCCCCCTTGGCATTCGTCACCACCTGCTGCATTCTCGGCTTGATCATAGGAAG
CTTCCTGAACGTAGTCGTCTACCGCTTGCCAATAATGATGGAGCGCGACTGGAAAGCACAATCCCGTGAAATGCTCGGCC
TCCCCGCCGAACAGGACCAGCCCGTTTTCAACCTGAACCGACCCCGTTCCAGCTGCCCGCACTGCGCGCACAAGATACGC
CCGTGGGAAAACCTGCCGATCCTCAGCTACCTGTTGCTGCGTGGGAAATGCTCGCAATGCAAAGCGCCGATCAGCAAACG
CTACCCGTTGGTCGAGCTGACCTGCGCAGTTTTGTCGGCCTATGTCGCCTGGCATTTTGGCTTTGGCTGGCAGGCTGCAG
CCATGTTGGTGTTGAGCTGGGGATTGCTGGCGATGAGTCTGATCGATGCCGATCATCAGCTGTTGCCTGATTCTCTGGTG
CTGCCATTGTTGTGGTTGGGCCTGATTGTTAACGCCTTTGGGCTGTTCACATCGCTAAATGATGCGCTCTGGGGGGCTGT
GGCGGGATATCTGGCGCTGTGGTCGGTGTTTTGGCTGTTCAAGCTGGTGACCGGCAAGGAAGGCATGGGTTATGGCGATT
TCAAACTGCTGGCCATGCTTGGCGCGTGGGGCGGTTGGCAGATTCTGCCGCTGACCGTGCTGCTGTCGTCGCTGGTGGGC
GCAGTGCTTGGGGTGATCATGATGCGCGTGCGCAGGGTCGAAAGCGGTACGCCGATCCCCTTTGGTCCTTATCTTGCCAT
TGCGGGGTGGATCGCTTTGCTCTGGGGTGGTCAAATAACCGACTCTTACATGCAGTTTGCCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.035	98.276	0.531
pilD	Vibrio campbellii strain DS40M4	50.877	98.276	0.5
pilD	Acinetobacter baumannii D1279779	51.636	94.828	0.49
pilD	Acinetobacter nosocomialis M2	51.273	94.828	0.486
pilD	Neisseria gonorrhoeae MS11	51.493	92.414	0.476