Detailed information NTG0404299

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: HWU15_RS02180
• Genome accession: NZ_CP058281
• Coordinates: 440362..441537 (-)
• Length: 391 a.a.
• NCBI ID: WP_237015778.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hk711
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 435362..446537

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HWU15_RS02145	-	435671..435985 (+)	315	WP_000868000.1	hypothetical protein	-
HWU15_RS02150	-	435963..436739 (+)	777	WP_237015775.1	RNA polymerase sigma factor FliA	-
HWU15_RS02155	fliM	436732..437796 (+)	1065	WP_001916889.1	flagellar motor switch protein FliM	-
HWU15_RS02160	fliY	437800..438672 (+)	873	WP_237015776.1	flagellar motor switch protein FliY	-
HWU15_RS02165	-	438700..439236 (+)	537	WP_237015777.1	YhcH/YjgK/YiaL family protein	-
HWU15_RS02170	-	439233..439730 (+)	498	WP_108304445.1	DUF2147 domain-containing protein	-
HWU15_RS02175	fur	439750..440202 (-)	453	WP_000825004.1	ferric iron uptake transcriptional regulator	-
HWU15_RS02180	rarA	440362..441537 (-)	1176	WP_237015778.1	replication-associated recombination protein A	Machinery gene
HWU15_RS02185	-	441534..441905 (-)	372	WP_000333001.1	heat shock protein transcriptional repressor HspR	-
HWU15_RS02190	-	441915..442781 (-)	867	WP_237015779.1	DnaJ C-terminal domain-containing protein	-
HWU15_RS02195	-	442949..444199 (+)	1251	WP_237015780.1	outer membrane family protein	-
HWU15_RS02200	-	444257..445123 (-)	867	WP_237016031.1	5'-3' exonuclease	-
HWU15_RS02205	-	445349..446245 (-)	897	WP_237015781.1	response regulator	-

Sequence

Protein

• Length: 391 a.a.
• Molecular weight: 43913.51 Da
• Isoelectric Point: 7.4747

>NTDB_id=404299 HWU15_RS02180 WP_237015778.1 440362..441537(-) (rarA) [Helicobacter pylori strain Hk711]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIACMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCAK
ALTWLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide

• Length: 1176 bp

>NTDB_id=404299 HWU15_RS02180 WP_237015778.1 440362..441537(-) (rarA) [Helicobacter pylori strain Hk711]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCTTACAATCCAAACACTTCCCCCACGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCTTGCATGCTAGAGCGCCCCATTCTTTTATTCAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCGCTAAA
GCTTTAACATGGCTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCTGAATGACGGATCTTATAGTGATGATACGCATTATAATCTTACTAGCGCTCTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATTTATTATTTGGCGCGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGAT
TTTTGCGAGTGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCGCTTCTTGCTTATTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAGTGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAATACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTATATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGATTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (7-117)

• MgsA AAA+ ATPase C terminal (MgsA_C) (238-389)

• AAA C-terminal domain (AAA_assoc_2) (168-237)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	37.136	100	0.391