Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   GD442_RS13060 Genome accession   NZ_CP046398
Coordinates   2588183..2588764 (-) Length   193 a.a.
NCBI ID   WP_001092372.1    Uniprot ID   A0A9W5R6W8
Organism   Bacillus sp. A260     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2583183..2593764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GD442_RS13030 (GD442_13035) - 2583811..2584311 (-) 501 WP_172605314.1 HIT family protein -
  GD442_RS13035 (GD442_13040) - 2584401..2584568 (-) 168 WP_000508402.1 hypothetical protein -
  GD442_RS13040 (GD442_13045) - 2584786..2585022 (+) 237 WP_000283223.1 hypothetical protein -
  GD442_RS13045 (GD442_13050) - 2585076..2585912 (-) 837 WP_001084759.1 proline/glycine betaine ABC transporter permease -
  GD442_RS13050 (GD442_13055) - 2585905..2587110 (-) 1206 WP_000370606.1 glycine betaine/L-proline ABC transporter ATP-binding protein -
  GD442_RS13055 (GD442_13060) - 2587282..2588139 (+) 858 WP_159365103.1 glycine betaine ABC transporter substrate-binding protein -
  GD442_RS13060 (GD442_13065) clpP 2588183..2588764 (-) 582 WP_001092372.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  GD442_RS13065 (GD442_13070) - 2588786..2589472 (-) 687 WP_000337509.1 RNA polymerase subunit sigma-70 -
  GD442_RS13070 (GD442_13075) - 2589615..2589935 (+) 321 WP_001125388.1 2Fe-2S iron-sulfur cluster-binding protein -
  GD442_RS13075 (GD442_13080) rpiA 2589940..2590602 (+) 663 WP_001049982.1 ribose 5-phosphate isomerase A -
  GD442_RS13080 (GD442_13085) - 2590714..2591148 (+) 435 WP_001190865.1 GNAT family N-acetyltransferase -
  GD442_RS13085 (GD442_13090) - 2591274..2592641 (-) 1368 WP_001065152.1 lytic polysaccharide monooxygenase -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21238.47 Da        Isoelectric Point: 5.0776

>NTDB_id=403911 GD442_RS13060 WP_001092372.1 2588183..2588764(-) (clpP) [Bacillus sp. A260]
MNTIPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDIYLYINSPGGSTTAGFAILDT
MNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIHQPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQ
PIERVAHDTERDYFMTAEEAKAYGIVDDVVTKK

Nucleotide


Download         Length: 582 bp        

>NTDB_id=403911 GD442_RS13060 WP_001092372.1 2588183..2588764(-) (clpP) [Bacillus sp. A260]
ATGAATACAATTCCATATGTAGTAGAACAAACAAAATTAGGAGAACGTTCCTATGATATATATTCAAGGTTATTAAAAGA
CCGCATTATTATTATCGGCTCAGAAATTAACGATCAAGTAGCGAGTAGTGTCGTAGCGCAATTATTATTTTTAGAAGCAG
AAGATGCAGAGAAAGATATATATTTATACATTAATAGCCCAGGAGGTTCAACGACAGCAGGTTTTGCAATATTAGATACG
ATGAATTTAATTAAACCAGATGTGCAAACGCTATGCATGGGCTTTGCGGCATCATTCGGTGCATTGTTATTATTATCAGG
AGCAAAAGGAAAACGGTTTGCGCTTCCTAACAGTGAAATTATGATTCATCAGCCGCTTGGTGGTGCACAAGGGCAAGCAA
CAGAAATTGAAATAACTGCGAAAAGAATATTAAAGTTAAAGCATGATATTAATAAAATGATTGCAGAAAAAACAGGCCAA
CCGATTGAAAGAGTAGCACATGATACAGAAAGAGATTATTTTATGACTGCAGAAGAAGCGAAGGCATATGGGATTGTAGA
TGACGTTGTTACGAAAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

68.586

98.964

0.679
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.725

97.927

0.663
  clpP Streptococcus pyogenes JRS4

56.614

97.927

0.554
  clpP Streptococcus pyogenes MGAS315

56.614

97.927

0.554
  clpP Streptococcus pneumoniae R6

55.729

99.482

0.554
  clpP Streptococcus pneumoniae TIGR4

55.729

99.482

0.554
  clpP Streptococcus pneumoniae Rx1

55.729

99.482

0.554
  clpP Streptococcus thermophilus LMG 18311

55.729

99.482

0.554
  clpP Streptococcus thermophilus LMD-9

55.729

99.482

0.554
  clpP Streptococcus pneumoniae D39

55.729

99.482

0.554
  clpP Streptococcus mutans UA159

54.497

97.927

0.534
  clpP Lactococcus lactis subsp. cremoris KW2

52.91

97.927

0.518
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

50.794

97.927

0.497

Multiple sequence alignment