Detailed information    

insolico Bioinformatically predicted

Overview


Name   letA   Type   Regulator
Locus tag   HUZ70_RS15190 Genome accession   NZ_CP055048
Coordinates   3178002..3178592 (+) Length   196 a.a.
NCBI ID   WP_000633668.1    Uniprot ID   P0AGA7
Organism   Escherichia coli strain SWHEFF_58     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 3173002..3183592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUZ70_RS15175 (HUZ70_15065) ilvN 3174257..3174547 (+) 291 WP_001181706.1 acetolactate synthase small subunit -
  HUZ70_RS15180 (HUZ70_15070) - 3175613..3176095 (+) 483 WP_073462037.1 hypothetical protein -
  HUZ70_RS15185 (HUZ70_15075) - 3176371..3177840 (+) 1470 WP_001551899.1 hypothetical protein -
  HUZ70_RS15190 (HUZ70_15080) letA 3178002..3178592 (+) 591 WP_000633668.1 transcriptional regulator UhpA Regulator
  HUZ70_RS15195 (HUZ70_15085) uhpB 3178592..3180094 (+) 1503 WP_001551898.1 signal transduction histidine-protein kinase/phosphatase UhpB -
  HUZ70_RS15200 (HUZ70_15090) uhpC 3180104..3181423 (+) 1320 WP_000936560.1 MFS transporter family glucose-6-phosphate receptor UhpC -
  HUZ70_RS15205 (HUZ70_15095) uhpT 3181679..3183070 (+) 1392 WP_000879194.1 hexose-6-phosphate:phosphate antiporter -

Sequence


Protein


Download         Length: 196 a.a.        Molecular weight: 20889.30 Da        Isoelectric Point: 5.9982

>NTDB_id=402667 HUZ70_RS15190 WP_000633668.1 3178002..3178592(+) (letA) [Escherichia coli strain SWHEFF_58]
MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSV
HDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAA
ELGLSPKTVHVHRANLMEKLGVSNDVELARRMFDGW

Nucleotide


Download         Length: 591 bp        

>NTDB_id=402667 HUZ70_RS15190 WP_000633668.1 3178002..3178592(+) (letA) [Escherichia coli strain SWHEFF_58]
ATGATCACCGTTGCCCTTATAGACGATCACCTCATCGTCCGCTCCGGCTTTGCGCAGTTGCTGGGGCTGGAACCTGATTT
GCAAGTAGTTGCCGAGTTTGGTTCGGGGCGCGAGGCGCTGGCGGGGTTGCCGGGGCGCGGTGTGCAGGTGTGTATTTGCG
ATATCTCCATGCCTGATATCTCCGGTCTGGAGCTGCTAAGCCAGCTGCCGAAAGGTATGGCGACGATTATGCTCTCTGTT
CATGACAGTCCGGCGCTGGTTGAGCAGGCGCTTAACGCGGGGGCGCGCGGCTTTCTCTCCAAACGCTGTAGCCCGGATGA
ACTGATTGCTGCGGTGCATACGGTTGCCACGGGCGGCTGTTATCTGACGCCGGATATTGCCATTAAACTGGCATCCGGTC
GCCAGGACCCGCTAACCAAACGTGAACGCCAGGTGGCGGAAAAACTGGCGCAAGGAATGGCGGTGAAAGAGATTGCCGCC
GAACTGGGCTTGTCACCGAAAACGGTACACGTCCATCGCGCCAATCTGATGGAAAAACTGGGCGTCAGTAACGACGTTGA
ACTGGCGCGCCGCATGTTTGATGGCTGGTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB P0AGA7

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

38.5

100

0.393

  letA Legionella pneumophila strain ERS1305867

38.5

100

0.393

  degU Bacillus subtilis subsp. subtilis str. 168

33.184

100

0.378


Multiple sequence alignment