Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   SOR_RS01335 Genome accession   NC_015291
Coordinates   251571..253550 (+) Length   659 a.a.
NCBI ID   WP_000749708.1    Uniprot ID   F2QGU5
Organism   Streptococcus oralis Uo5     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 246571..258550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOR_RS09870 (SOR_0264) - 247018..247248 (+) 231 WP_002892633.1 DUF1146 family protein -
  SOR_RS01310 (SOR_0265) murA 247272..248555 (+) 1284 WP_000411922.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SOR_RS01315 (SOR_0266) - 248542..248736 (+) 195 WP_000739701.1 DNA-directed RNA polymerase subunit beta -
  SOR_RS01320 (SOR_0267) endA 248777..249601 (+) 825 WP_000359004.1 DNA/RNA non-specific endonuclease Machinery gene
  SOR_RS01325 (SOR_0268) - 249737..251068 (+) 1332 WP_000390021.1 hemolysin family protein -
  SOR_RS01335 (SOR_0270) amiA3 251571..253550 (+) 1980 WP_000749708.1 peptide ABC transporter substrate-binding protein Regulator
  SOR_RS01340 (SOR_0271) amiC 253617..255113 (+) 1497 WP_000759894.1 ABC transporter permease Regulator
  SOR_RS01345 (SOR_0272) amiD 255113..256039 (+) 927 WP_000103692.1 oligopeptide ABC transporter permease OppC Regulator
  SOR_RS01350 (SOR_0273) amiE 256048..257115 (+) 1068 WP_000589572.1 ABC transporter ATP-binding protein Regulator
  SOR_RS01355 (SOR_0274) amiF 257126..258055 (+) 930 WP_001291307.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 72887.01 Da        Isoelectric Point: 4.8312

>NTDB_id=40180 SOR_RS01335 WP_000749708.1 251571..253550(+) (amiA3) [Streptococcus oralis Uo5]
MKKSRVFVAAGVALLAAGVLAACGSSKSSDSTAPKNYGYVYSADPETLDYLISGKQSTKIATSNGIDGLFTNDKYGNLVP
AVAEDWSVSKDGLTYTYKIRKGVKWMTSDGEEYAEVTAKDFVNGLKHATDKKSEALYLAEDSVKGLADYKAGNNKDFSSV
GVKAVDDYTLEYTLNQPEPYWNSKMAYSIFWPLNEDFEKSKGADFAKATDPTSLLYNGPFLLKGLTAKSSIEFAKNENYW
DKDNVHIDKVTLAFYDGSDQESIERNFTSGAYSYARLFPTSSNYSKVEETYKENIFYTPSGPSVFGLGVNIDRQSYKYTS
KTTDEEKSSTKKALLNKDFRQALNFAFDRTSYSAQVNGKEGAPLAVRNLFVKPNFVSAGEKTFGDLVTDKMAAYGDEWKN
VNFADGQDGLFNADKAKAEFAKAKTALEAEGVKFPIHLDIPVDQTAKSYIARIQSFKQSVETVLGEGNVVIDIQQISKDE
LNNITYYAANAAAEDWDLSGAVGWNPDYEDPSTYLDILKTTNSEQTKTYMGYDDPANAAAAQVGLKEYDKLVDEAAKETN
DLNVRYEKYAAAQAWLTDSSLFLPAMSGSGAAPFISRVVPFSASYSQSGDKGSDVYFKYIQLQDKVVTKADYEQAREKWL
KEKKESNEKVQKELANHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=40180 SOR_RS01335 WP_000749708.1 251571..253550(+) (amiA3) [Streptococcus oralis Uo5]
ATGAAAAAAAGTAGAGTATTTGTTGCAGCAGGAGTTGCTTTATTAGCGGCAGGAGTACTAGCTGCTTGCGGTTCTTCAAA
ATCATCTGATTCAACAGCGCCAAAAAATTATGGCTATGTTTATTCAGCTGACCCAGAAACTTTGGATTACCTTATTTCAG
GGAAACAAAGTACTAAGATTGCCACTTCAAATGGTATCGATGGTCTCTTCACAAACGACAAGTATGGGAACCTAGTCCCT
GCAGTTGCAGAAGACTGGTCCGTTTCAAAAGATGGTTTGACTTATACCTACAAGATTCGTAAGGGTGTTAAATGGATGAC
ATCTGATGGCGAAGAATATGCTGAAGTAACAGCCAAAGACTTTGTAAATGGCTTGAAACACGCGACTGATAAAAAATCAG
AAGCACTTTACCTAGCAGAAGATTCAGTTAAAGGTCTAGCTGACTATAAAGCTGGAAATAATAAAGACTTTTCTTCAGTA
GGTGTAAAGGCAGTTGATGATTATACTCTTGAGTATACTTTGAACCAGCCAGAACCATACTGGAATTCTAAGATGGCCTA
CTCAATCTTCTGGCCATTGAACGAAGATTTTGAAAAATCAAAAGGGGCTGACTTTGCCAAAGCAACTGACCCTACATCAT
TGCTTTACAATGGTCCGTTCTTACTGAAAGGTTTGACTGCTAAATCTTCTATCGAGTTCGCTAAGAATGAAAATTACTGG
GACAAAGATAATGTTCATATTGATAAAGTAACCCTTGCTTTCTATGATGGATCAGACCAAGAGTCAATTGAACGTAACTT
TACAAGTGGAGCCTATAGCTATGCTCGTCTCTTCCCAACAAGTTCAAACTATTCTAAAGTAGAAGAGACTTACAAGGAAA
ATATCTTCTACACTCCATCAGGACCTAGCGTTTTTGGTCTAGGTGTGAATATTGACCGTCAAAGTTACAAATACACTTCT
AAGACAACTGATGAAGAAAAGTCTTCTACTAAGAAAGCCCTTCTTAACAAGGACTTCCGTCAGGCCTTGAACTTTGCCTT
TGACCGTACTTCTTACTCAGCTCAAGTAAATGGTAAGGAAGGTGCTCCTCTTGCAGTTCGTAACCTCTTTGTGAAACCTA
ACTTTGTCTCAGCAGGCGAAAAAACTTTCGGTGACTTGGTAACTGATAAGATGGCTGCTTACGGTGATGAGTGGAAGAAT
GTAAACTTTGCGGATGGTCAAGATGGACTTTTCAACGCTGATAAAGCCAAAGCCGAATTTGCCAAAGCCAAAACAGCATT
GGAAGCAGAAGGTGTGAAATTCCCTATCCACTTGGATATCCCAGTAGACCAAACTGCTAAGAGCTATATCGCACGTATCC
AATCCTTCAAACAATCCGTTGAAACAGTACTTGGTGAAGGCAATGTAGTCATTGATATTCAACAAATTTCTAAAGATGAG
TTGAACAATATCACATACTATGCTGCAAACGCTGCAGCAGAAGATTGGGATCTCTCAGGAGCAGTTGGATGGAACCCAGA
CTATGAAGATCCATCAACTTATCTTGATATCTTGAAAACAACTAACAGCGAGCAAACAAAAACTTATATGGGTTATGACG
ATCCAGCAAATGCAGCAGCTGCACAAGTTGGTTTGAAAGAATACGATAAGTTAGTTGATGAAGCTGCAAAAGAAACCAAC
GACTTGAATGTTCGTTATGAAAAATATGCGGCTGCTCAAGCTTGGTTGACAGACAGCTCCCTCTTCTTGCCAGCTATGTC
AGGTAGTGGTGCTGCACCATTCATTTCTCGTGTTGTACCATTCTCTGCATCATACAGTCAATCTGGAGATAAGGGATCAG
ACGTATACTTCAAGTATATTCAGTTACAAGATAAAGTTGTAACAAAAGCTGACTATGAACAAGCTCGTGAAAAATGGCTC
AAAGAGAAAAAAGAATCAAACGAAAAAGTTCAAAAAGAATTGGCTAATCACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F2QGU5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

68.485

100

0.686
  amiA3 Streptococcus thermophilus LMG 18311

68.333

100

0.684
  amiA Streptococcus salivarius strain HSISS4

68.285

100

0.683

Multiple sequence alignment