Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   SOR_RS01355 Genome accession   NC_015291
Coordinates   257126..258055 (+) Length   309 a.a.
NCBI ID   WP_001291307.1    Uniprot ID   F2QGU9
Organism   Streptococcus oralis Uo5     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 252126..263055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOR_RS01340 (SOR_0271) amiC 253617..255113 (+) 1497 WP_000759894.1 ABC transporter permease Regulator
  SOR_RS01345 (SOR_0272) amiD 255113..256039 (+) 927 WP_000103692.1 oligopeptide ABC transporter permease OppC Regulator
  SOR_RS01350 (SOR_0273) amiE 256048..257115 (+) 1068 WP_000589572.1 ABC transporter ATP-binding protein Regulator
  SOR_RS01355 (SOR_0274) amiF 257126..258055 (+) 930 WP_001291307.1 ATP-binding cassette domain-containing protein Regulator
  SOR_RS01360 (SOR_0275) - 258144..259583 (-) 1440 WP_001043431.1 TrkH family potassium uptake protein -
  SOR_RS01365 (SOR_0276) trkA 259587..260936 (-) 1350 WP_000706814.1 Trk system potassium transporter TrkA -
  SOR_RS01370 (SOR_0277) - 261337..261840 (+) 504 WP_000181368.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  SOR_RS01375 (SOR_0279) - 262252..262815 (+) 564 WP_000185847.1 ECF transporter S component -

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35097.31 Da        Isoelectric Point: 7.0424

>NTDB_id=40184 SOR_RS01355 WP_001291307.1 257126..258055(+) (amiF) [Streptococcus oralis Uo5]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNNTSKGEIIFDGHKINGKKSHK
ESSDLIRRIQMIFQDPAASLNERATVDYIISEGLYNYHLFKDEEDRKEKVQKMIHEVGLLKEHLTRYPHEFSGGQRQRIG
IARALVMEPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPVHPYTQALLSAVPIPDPILERKKVLKVYDPDQHDYETDKPSMVEIRPGHYVWANQAELARYKETLKK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=40184 SOR_RS01355 WP_001291307.1 257126..258055(+) (amiF) [Streptococcus oralis Uo5]
ATGTCTGAAAAATTAGTAGAAATTAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTCGCGGTTAAAAA
CGCCAACTTCTTTATCAACAAGGGAGAAACTTTCTCTCTTGTTGGTGAGTCTGGTAGTGGGAAAACAACGATTGGTCGTG
CCATTATTGGTCTAAATAATACTAGTAAAGGTGAGATCATCTTTGATGGTCATAAGATTAATGGAAAAAAATCTCATAAG
GAATCATCAGACTTGATCCGTCGTATCCAGATGATTTTCCAGGACCCTGCAGCTAGCTTGAATGAGCGTGCGACGGTTGA
CTATATCATCTCTGAAGGTCTTTACAACTATCACTTGTTCAAAGACGAAGAAGATCGTAAAGAAAAAGTTCAAAAGATGA
TTCATGAAGTTGGACTTTTGAAAGAACACTTGACCCGTTACCCACACGAGTTTTCTGGTGGGCAACGTCAGCGTATCGGG
ATTGCCCGTGCCCTTGTGATGGAACCTGATTTCGTTATTGCGGATGAGCCAATCTCTGCCTTGGACGTATCTGTTCGTGC
GCAAGTTTTGAACTTGCTCAAGAAGTTCCAAAAAGAGTTGGGCTTGACTTATCTCTTTATCGCGCATGACTTGTCAGTTG
TTCGCTTTATCTCAGATCGTATCGCAGTTATCTATAAGGGAGTTATCGTCGAAGTGGCGGAGACAGAGGAGTTGTTTAAC
AATCCTGTCCACCCATATACTCAGGCGCTTCTATCTGCTGTACCGATTCCAGATCCAATCTTGGAACGCAAGAAAGTCTT
GAAAGTTTACGACCCTGACCAACATGACTATGAGACAGATAAGCCATCTATGGTAGAAATTCGTCCAGGTCACTACGTTT
GGGCTAACCAAGCAGAACTTGCTCGATACAAAGAAACTCTTAAAAAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F2QGU9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

85.113

100

0.851
  amiF Streptococcus thermophilus LMG 18311

84.142

100

0.841
  amiF Streptococcus thermophilus LMD-9

83.819

100

0.838

Multiple sequence alignment