Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   SOR_RS01345 Genome accession   NC_015291
Coordinates   255113..256039 (+) Length   308 a.a.
NCBI ID   WP_000103692.1    Uniprot ID   A0A081R278
Organism   Streptococcus oralis Uo5     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 250113..261039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOR_RS01335 (SOR_0270) amiA3 251571..253550 (+) 1980 WP_000749708.1 peptide ABC transporter substrate-binding protein Regulator
  SOR_RS01340 (SOR_0271) amiC 253617..255113 (+) 1497 WP_000759894.1 ABC transporter permease Regulator
  SOR_RS01345 (SOR_0272) amiD 255113..256039 (+) 927 WP_000103692.1 oligopeptide ABC transporter permease OppC Regulator
  SOR_RS01350 (SOR_0273) amiE 256048..257115 (+) 1068 WP_000589572.1 ABC transporter ATP-binding protein Regulator
  SOR_RS01355 (SOR_0274) amiF 257126..258055 (+) 930 WP_001291307.1 ATP-binding cassette domain-containing protein Regulator
  SOR_RS01360 (SOR_0275) - 258144..259583 (-) 1440 WP_001043431.1 TrkH family potassium uptake protein -
  SOR_RS01365 (SOR_0276) trkA 259587..260936 (-) 1350 WP_000706814.1 Trk system potassium transporter TrkA -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34667.68 Da        Isoelectric Point: 9.0162

>NTDB_id=40182 SOR_RS01345 WP_000103692.1 255113..256039(+) (amiD) [Streptococcus oralis Uo5]
MSTIDKEKFQFVKRDDFASETIDAPAYSYWGSVFRQFLKKKSTVFMLGILVAIILMSFIYPMFSDFDFNDVSKVNDFSAR
FIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATFINLVIGVIVGGIWGISKSVDRVMMEVYNIISNIPSLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAYMIRIQIMRYRDLEYNLASQTLGTPTFKIIVKNIMPQLVSVIVSTMTLMLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=40182 SOR_RS01345 WP_000103692.1 255113..256039(+) (amiD) [Streptococcus oralis Uo5]
ATGTCAACAATCGATAAAGAAAAATTTCAGTTCGTAAAACGTGACGATTTTGCCTCTGAAACAATTGATGCTCCTGCCTA
TTCATACTGGGGTTCTGTATTTAGACAATTTCTAAAGAAAAAATCAACCGTCTTTATGCTAGGAATTTTGGTTGCCATTA
TCTTGATGAGCTTTATTTACCCAATGTTCTCAGATTTTGACTTCAACGATGTAAGTAAGGTCAATGACTTCTCTGCTCGT
TTTATCAAACCCAATGCTGAACATTGGTTTGGTACAGATAGTAATGGTAAATCCTTGTTTGACGGGGTTTGGTTTGGTGC
GCGTAACTCTATCCTCATCTCTGTCATTGCAACTTTTATCAACCTTGTAATTGGGGTTATTGTTGGTGGAATCTGGGGAA
TTTCAAAATCTGTTGACCGTGTCATGATGGAAGTTTATAACATTATTTCAAACATTCCATCTCTCTTGATTGTCATTGTC
TTGACTTACTCAATCGGTGCTGGTTTCTGGAATTTGATTTTTGCCATGAGTGTGACAACTTGGATTGGGATTGCTTATAT
GATTCGTATCCAAATCATGCGTTACCGTGACTTGGAATACAACCTTGCTTCCCAAACACTTGGGACACCAACCTTTAAAA
TCATCGTTAAAAATATCATGCCACAATTGGTATCCGTTATTGTTTCTACGATGACCTTGATGTTGCCAAGCTTCATCTCT
TATGAAGCCTTCCTTTCCTTCTTTGGATTGGGATTGCCTGTAACAGTGCCAAGTCTGGGACGATTGATCTCAGATTACTC
ACAAAACGTTACGACCAACGCTTACTTATTCTGGATTCCGTTGACTACCTTGATCTTGGTATCCCTATCTCTTTTTGTTG
TTGGTCAAAACCTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(123-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A081R278

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

83.442

100

0.834
  amiD Streptococcus thermophilus LMG 18311

81.818

100

0.818
  amiD Streptococcus thermophilus LMD-9

81.818

100

0.818

Multiple sequence alignment