Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   SOR_RS01340 Genome accession   NC_015291
Coordinates   253617..255113 (+) Length   498 a.a.
NCBI ID   WP_000759894.1    Uniprot ID   A0A139PWX2
Organism   Streptococcus oralis Uo5     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 248617..260113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOR_RS01320 (SOR_0267) endA 248777..249601 (+) 825 WP_000359004.1 DNA/RNA non-specific endonuclease Machinery gene
  SOR_RS01325 (SOR_0268) - 249737..251068 (+) 1332 WP_000390021.1 hemolysin family protein -
  SOR_RS01335 (SOR_0270) amiA3 251571..253550 (+) 1980 WP_000749708.1 peptide ABC transporter substrate-binding protein Regulator
  SOR_RS01340 (SOR_0271) amiC 253617..255113 (+) 1497 WP_000759894.1 ABC transporter permease Regulator
  SOR_RS01345 (SOR_0272) amiD 255113..256039 (+) 927 WP_000103692.1 oligopeptide ABC transporter permease OppC Regulator
  SOR_RS01350 (SOR_0273) amiE 256048..257115 (+) 1068 WP_000589572.1 ABC transporter ATP-binding protein Regulator
  SOR_RS01355 (SOR_0274) amiF 257126..258055 (+) 930 WP_001291307.1 ATP-binding cassette domain-containing protein Regulator
  SOR_RS01360 (SOR_0275) - 258144..259583 (-) 1440 WP_001043431.1 TrkH family potassium uptake protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55743.13 Da        Isoelectric Point: 9.2425

>NTDB_id=40181 SOR_RS01340 WP_000759894.1 253617..255113(+) (amiC) [Streptococcus oralis Uo5]
MKKYIFMRVLRSLLSIFLVTTLTYTIIYTMVPRKLIFKQDTNYNKIATTPDKRDNYENTVYERMGYIEYYDTKELQERAS
TMDSSVTVDANDTNKAIYEKYINQLGNGWTLGVFSESGQFYATREIPIFERVFKFYSNLIDIDHPNKIQDPENPNLQRYL
RFENDPAIGWSLVGSGTKHKYLLYFNNQFPFVHQNFVNINLGDSYPTYANTPVLQVITQGQGQTKTSEVQFPTGKKTSSV
DIYSRTYKSPSQADAREVANYGKDDPYTATESNYQYPSMIASSAVAGLIGLIISYAIAIPLGSAMARHKNTWIDSFSTGA
LTFLLALPTIALVYIVRLIGSSIGLPDSFPILGAGDWRSYVLPAVILGLLGAPSTAIWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVSGIPGAVIGVIGGATLTETVFAFPGMGKMLIDSVKASNNSMVVGLVFIFTCISIFSLFVGD
IWMTMLDPRIKLTEKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=40181 SOR_RS01340 WP_000759894.1 253617..255113(+) (amiC) [Streptococcus oralis Uo5]
ATGAAGAAATATATTTTTATGCGTGTATTGCGTTCATTGTTGTCTATTTTCTTGGTGACAACTTTGACATACACAATAAT
TTATACGATGGTTCCTCGAAAATTGATTTTCAAGCAGGATACCAACTATAACAAGATTGCAACGACACCGGACAAGCGGG
ATAATTATGAAAATACCGTTTATGAACGGATGGGCTATATCGAGTACTACGATACCAAAGAGTTGCAAGAAAGAGCGAGT
ACAATGGACTCATCTGTAACAGTGGATGCCAATGATACCAATAAGGCAATCTACGAAAAATACATCAACCAACTAGGAAA
TGGTTGGACACTCGGTGTGTTCTCAGAAAGTGGTCAATTCTATGCTACGCGTGAAATTCCGATTTTTGAACGTGTTTTCA
AATTCTATTCCAACTTGATTGATATTGATCATCCAAACAAGATTCAAGACCCTGAAAACCCAAACTTGCAACGTTATCTT
CGTTTTGAAAATGACCCTGCTATCGGTTGGTCATTGGTTGGTTCAGGTACAAAACACAAATACCTTTTGTATTTCAACAA
TCAATTCCCATTTGTACACCAAAACTTTGTGAACATTAACTTGGGAGATTCTTACCCAACTTATGCAAACACACCAGTGC
TTCAAGTTATCACACAAGGTCAGGGACAAACTAAGACATCAGAAGTTCAATTCCCTACAGGTAAAAAGACTTCATCTGTA
GATATTTACTCTCGTACCTACAAATCACCAAGCCAAGCAGACGCGCGTGAGGTAGCCAACTATGGTAAAGACGATCCATA
TACAGCTACAGAAAGCAATTATCAATATCCTTCAATGATTGCAAGCTCAGCGGTTGCTGGTTTGATTGGTTTGATTATTT
CTTATGCGATTGCCATTCCACTTGGATCTGCGATGGCTCGCCACAAAAATACTTGGATTGACAGCTTCTCGACAGGTGCT
CTTACCTTCTTGCTTGCCCTTCCAACGATTGCCTTGGTATATATTGTGCGTTTGATTGGATCATCTATTGGTCTGCCAGA
CTCATTCCCTATCTTGGGGGCTGGAGATTGGCGTTCTTATGTCTTGCCAGCAGTCATTCTAGGTTTGTTGGGTGCGCCAA
GTACAGCTATCTGGATTCGTCGTTACATGATCGACTTGCAATCCCAGGACTTTGTACGTTTTGCGCGTGCCAAAGGTTTG
TCTGAAAAAGAAATTTCAAATAAACACATCTTTAAAAATGCCATGGTTCCACTGGTTTCAGGTATTCCTGGTGCCGTTAT
CGGGGTTATCGGTGGTGCAACATTGACAGAAACGGTCTTTGCTTTCCCAGGTATGGGTAAAATGTTGATTGACTCTGTTA
AGGCATCAAACAACTCAATGGTTGTTGGTCTCGTCTTTATCTTTACATGTATTTCTATCTTCTCACTCTTTGTAGGAGAT
ATCTGGATGACCATGCTTGACCCACGTATTAAATTGACAGAGAAAGGAGGCAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A139PWX2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

76.707

100

0.767
  amiC Streptococcus thermophilus LMG 18311

76.104

100

0.761
  amiC Streptococcus thermophilus LMD-9

75.904

100

0.759

Multiple sequence alignment