Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   SSAL_RS04950 Genome accession   NC_017594
Coordinates   1090294..1091364 (-) Length   356 a.a.
NCBI ID   WP_045001736.1    Uniprot ID   -
Organism   Streptococcus salivarius 57.I     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1085294..1096364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSAL_RS04935 (Ssal_01105) pstB 1086017..1086775 (+) 759 WP_002884992.1 phosphate ABC transporter ATP-binding protein PstB -
  SSAL_RS04940 (Ssal_01106) phoU 1086804..1087457 (+) 654 WP_014633132.1 phosphate signaling complex protein PhoU -
  SSAL_RS04945 (Ssal_01107) - 1087591..1090131 (+) 2541 WP_014633133.1 M1 family metallopeptidase -
  SSAL_RS04950 (Ssal_01108) xerS 1090294..1091364 (-) 1071 WP_045001736.1 tyrosine recombinase XerS Machinery gene
  SSAL_RS04955 (Ssal_01109) - 1091811..1092275 (-) 465 WP_045001738.1 hypothetical protein -
  SSAL_RS04960 - 1092320..1092883 (-) 564 WP_045001740.1 hypothetical protein -
  SSAL_RS04965 (Ssal_01111) - 1092876..1093094 (-) 219 WP_014633137.1 hypothetical protein -
  SSAL_RS04970 (Ssal_01112) - 1093557..1094546 (-) 990 WP_014633138.1 lipoate--protein ligase -
  SSAL_RS04975 (Ssal_01113) - 1094670..1095803 (+) 1134 WP_102787826.1 hypothetical protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41411.50 Da        Isoelectric Point: 9.3734

>NTDB_id=40179 SSAL_RS04950 WP_045001736.1 1090294..1091364(-) (xerS) [Streptococcus salivarius 57.I]
MKRELLLEKIEEYKSLMPWFVLEYYQSKLSVPYSFTTLYEYLKEYKRFFDWLIESGISDADDIASIDIKTLENLTKKDME
SFVLYLRERPSLNTYSKKQGVSQTTINRTLSALSSLYKYLTEEVEGPDGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETMEFLDYVENEYEVKLSNRAKSSFYKNKERDLAIIALLLASGVRLSEAVNLDLKDINLKMMVIDVTRKGGKRDS
VNVASFAKPYLETYLSIRDKRYKAEKQDVALFLTEYRGVPNRIDASSIEKMVAKYSQDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=40179 SSAL_RS04950 WP_045001736.1 1090294..1091364(-) (xerS) [Streptococcus salivarius 57.I]
ATGAAACGTGAACTCTTACTCGAAAAAATTGAGGAATACAAATCTCTAATGCCCTGGTTTGTTCTTGAGTATTATCAGTC
TAAACTATCAGTACCGTATTCTTTTACGACCTTATACGAATACCTTAAGGAATATAAACGCTTTTTTGACTGGTTGATTG
AGTCAGGTATTTCAGATGCTGATGATATTGCCTCAATTGACATCAAAACCTTGGAAAATCTAACTAAAAAAGATATGGAG
TCATTTGTGCTTTATCTACGTGAACGTCCATCTTTGAATACCTATTCCAAGAAACAGGGTGTCTCTCAAACGACCATTAA
TCGTACACTTTCAGCTCTATCTAGTCTCTATAAGTATTTAACCGAGGAGGTCGAGGGTCCTGACGGTGAGCCGTATTTCT
ATCGTAACGTTATGAAAAAAGTTTCTACTAAGAAAAAGAAAGAAACTCTAGCTGCACGTGCTGAGAATATCAAACAGAAA
CTCTTTCTAGGCGATGAAACCATGGAATTCCTTGATTATGTAGAAAATGAATACGAAGTCAAGCTCTCAAATCGCGCTAA
ATCATCGTTTTATAAGAATAAAGAACGTGATTTAGCTATCATTGCCTTGCTGCTGGCTTCAGGTGTTCGACTTTCTGAGG
CTGTTAATTTGGATCTTAAAGATATCAATCTAAAAATGATGGTCATCGACGTTACTCGAAAAGGTGGCAAACGTGACTCA
GTTAATGTAGCAAGTTTTGCAAAACCGTATCTTGAAACTTATCTTAGTATACGTGATAAACGCTATAAGGCTGAAAAGCA
AGATGTTGCCCTCTTTTTAACGGAATATCGAGGGGTCCCAAACCGTATTGATGCTTCAAGTATCGAAAAGATGGTTGCCA
AATATTCTCAGGATTTCAAGATACGTGTGACTCCCCATAAACTACGACATACTTTGGCAACACGTCTTTATGATGCTACC
AAGTCTCAAGTTTTAGTTAGTCACCAACTTGGCCATGCTTCCACTCAAGTTACCGATCTATATACGCATATTGTTAATGA
TGAGCAAAAAAATGCTCTAGACAATTTATAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(183-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.708

100

0.837

Multiple sequence alignment