Detailed information
Bioinformatically predicted
Overview
| Name | clpP | Type | Regulator |
| Locus tag | GKC25_RS15395 | Genome accession | NZ_CP046128 |
| Coordinates | 3004258..3004854 (+) | Length | 198 a.a. |
| NCBI ID | WP_034660066.1 | Uniprot ID | - |
| Organism | Bacillus pumilus strain V17C11 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2999258..3009854
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GKC25_RS15375 (GKC25_15210) | nikA | 2999575..3001206 (-) | 1632 | WP_095285759.1 | nickel ABC transporter substrate-binding protein | - |
| GKC25_RS15380 (GKC25_15215) | - | 3001329..3002498 (-) | 1170 | WP_342689236.1 | macrolide family glycosyltransferase | - |
| GKC25_RS15385 (GKC25_15220) | - | 3002667..3003557 (-) | 891 | WP_223249916.1 | ABC transporter substrate-binding protein | - |
| GKC25_RS15395 (GKC25_15230) | clpP | 3004258..3004854 (+) | 597 | WP_034660066.1 | ATP-dependent Clp endopeptidase proteolytic subunit ClpP | Regulator |
| GKC25_RS15400 (GKC25_15235) | - | 3004914..3005492 (-) | 579 | WP_034660067.1 | TIGR00730 family Rossman fold protein | - |
| GKC25_RS15405 (GKC25_15240) | - | 3005630..3005971 (+) | 342 | WP_034660068.1 | MazG-like family protein | - |
| GKC25_RS15410 (GKC25_15245) | - | 3006000..3007622 (-) | 1623 | WP_342689845.1 | SulP family inorganic anion transporter | - |
| GKC25_RS15415 (GKC25_15250) | - | 3007660..3008241 (-) | 582 | WP_034660712.1 | carbonic anhydrase | - |
| GKC25_RS15420 (GKC25_15255) | - | 3008795..3009772 (+) | 978 | WP_342689846.1 | D-glycerate dehydrogenase | - |
Sequence
Protein
Download Length: 198 a.a. Molecular weight: 21832.99 Da Isoelectric Point: 4.6141
>NTDB_id=401403 GKC25_RS15395 WP_034660066.1 3004258..3004854(+) (clpP) [Bacillus pumilus strain V17C11]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT
MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILSLRDKLNQVLAERTGQ
PIEVIERDTDRDNFKTAEEALEYGLIDKVLTRNSEEQK
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT
MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILSLRDKLNQVLAERTGQ
PIEVIERDTDRDNFKTAEEALEYGLIDKVLTRNSEEQK
Nucleotide
Download Length: 597 bp
>NTDB_id=401403 GKC25_RS15395 WP_034660066.1 3004258..3004854(+) (clpP) [Bacillus pumilus strain V17C11]
ATGAATTTAATACCTACAGTCATTGAGCAAACAAATCGTGGGGAAAGAGCTTACGACATTTATTCTCGTCTTTTAAAAGA
CCGTATTATCATGCTTGGTTCTGCGATCGATGACAATGTTGCCAACTCCATCGTGTCACAGCTGCTTTTCTTAGAAGCTG
AAGATCCAGAAAAAGATATTTCTATCTACATTAACAGCCCTGGCGGTTCGATCACAGCTGGTATGGCCATTTACGATACG
ATGCAATTTATTAAACCAAAGGTATCAACCATTTGTATTGGTATGGCTGCATCTATGGGTGCGTTCCTGCTTGCTGCTGG
TGAAAAAGGTAAGCGTTATGCCCTTCCAAACAGTGAAGTCATGATTCACCAACCACTAGGTGGTGCCCAAGGTCAAGCAA
CAGAAATTGAAATTGCGGCAAAACGAATCCTTTCTTTACGCGATAAACTGAACCAAGTACTTGCTGAACGTACTGGTCAG
CCAATTGAAGTGATTGAGCGCGATACAGATCGTGACAACTTCAAAACAGCGGAAGAAGCACTTGAATACGGACTTATTGA
CAAAGTCTTGACCCGTAATTCAGAAGAACAAAAATAA
ATGAATTTAATACCTACAGTCATTGAGCAAACAAATCGTGGGGAAAGAGCTTACGACATTTATTCTCGTCTTTTAAAAGA
CCGTATTATCATGCTTGGTTCTGCGATCGATGACAATGTTGCCAACTCCATCGTGTCACAGCTGCTTTTCTTAGAAGCTG
AAGATCCAGAAAAAGATATTTCTATCTACATTAACAGCCCTGGCGGTTCGATCACAGCTGGTATGGCCATTTACGATACG
ATGCAATTTATTAAACCAAAGGTATCAACCATTTGTATTGGTATGGCTGCATCTATGGGTGCGTTCCTGCTTGCTGCTGG
TGAAAAAGGTAAGCGTTATGCCCTTCCAAACAGTGAAGTCATGATTCACCAACCACTAGGTGGTGCCCAAGGTCAAGCAA
CAGAAATTGAAATTGCGGCAAAACGAATCCTTTCTTTACGCGATAAACTGAACCAAGTACTTGCTGAACGTACTGGTCAG
CCAATTGAAGTGATTGAGCGCGATACAGATCGTGACAACTTCAAAACAGCGGAAGAAGCACTTGAATACGGACTTATTGA
CAAAGTCTTGACCCGTAATTCAGAAGAACAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpP | Bacillus subtilis subsp. subtilis str. 168 |
92.893 |
99.495 |
0.924 |
| clpP | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
68.063 |
96.465 |
0.657 |
| clpP | Streptococcus thermophilus LMG 18311 |
59.067 |
97.475 |
0.576 |
| clpP | Streptococcus thermophilus LMD-9 |
59.067 |
97.475 |
0.576 |
| clpP | Lactococcus lactis subsp. cremoris KW2 |
57.216 |
97.98 |
0.561 |
| clpP | Streptococcus pneumoniae D39 |
56.701 |
97.98 |
0.556 |
| clpP | Streptococcus pneumoniae Rx1 |
56.701 |
97.98 |
0.556 |
| clpP | Streptococcus pneumoniae R6 |
56.701 |
97.98 |
0.556 |
| clpP | Streptococcus pneumoniae TIGR4 |
56.701 |
97.98 |
0.556 |
| clpP | Lactococcus lactis subsp. lactis strain DGCC12653 |
55.155 |
97.98 |
0.54 |
| clpP | Streptococcus pyogenes JRS4 |
55.44 |
97.475 |
0.54 |
| clpP | Streptococcus pyogenes MGAS315 |
55.44 |
97.475 |
0.54 |
| clpP | Streptococcus mutans UA159 |
54.639 |
97.98 |
0.535 |