Detailed information NTG0401343

Bioinformatically predicted

Overview

• Name: comFC
• Type: Machinery gene
• Locus tag: GKC22_RS15940
• Genome accession: NZ_CP046127
• Coordinates: 3113465..3114151 (-)
• Length: 228 a.a.
• NCBI ID: WP_189318694.1
• Uniprot ID: -
• Organism: Bacillus pumilus strain P48C1
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3108465..3119151

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GKC22_RS15905 (GKC22_15775)	fliW	3108598..3109032 (-)	435	WP_034660142.1	flagellar assembly protein FliW	-
GKC22_RS15910 (GKC22_15780)	-	3109061..3109639 (-)	579	WP_034660143.1	DUF6470 family protein	-
GKC22_RS15915 (GKC22_15785)	flgL	3109688..3110599 (-)	912	WP_342689248.1	flagellar hook-associated protein FlgL	-
GKC22_RS15920 (GKC22_15790)	flgK	3110609..3112129 (-)	1521	WP_342689249.1	flagellar hook-associated protein FlgK	-
GKC22_RS15925 (GKC22_15795)	-	3112145..3112627 (-)	483	WP_034660146.1	flagellar protein FlgN	-
GKC22_RS15930 (GKC22_15800)	flgM	3112646..3112909 (-)	264	WP_003213252.1	flagellar biosynthesis anti-sigma factor FlgM	-
GKC22_RS15935 (GKC22_15805)	-	3112989..3113408 (-)	420	WP_034660147.1	TIGR03826 family flagellar region protein	-
GKC22_RS15940	comFC	3113465..3114151 (-)	687	WP_189318694.1	ComF family protein	Machinery gene
GKC22_RS15945 (GKC22_15815)	-	3114148..3114441 (-)	294	WP_060597398.1	competence protein ComFB	-
GKC22_RS15950 (GKC22_15820)	comFA	3114508..3115887 (-)	1380	WP_302621044.1	DEAD/DEAH box helicase	Machinery gene
GKC22_RS15955 (GKC22_15825)	-	3116008..3116850 (-)	843	WP_034660152.1	DegV family protein	-
GKC22_RS15960 (GKC22_15830)	degU	3117068..3117757 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
GKC22_RS15965 (GKC22_15835)	degS	3117822..3118997 (-)	1176	WP_003213166.1	sensor histidine kinase	Regulator

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 26076.52 Da
• Isoelectric Point: 9.9327

>NTDB_id=401343 GKC22_RS15940 WP_189318694.1 3113465..3114151(-) (comFC) [Bacillus pumilus strain P48C1]
MICLICEGHFVAAFTWKSLLLLNDDHLCIACKHHLEKIQRPICPACGRAQSNDQLCQDCSRWKERPDSTTVLVKNRSVYA
YNDLMKDVLSRFKFRGDTALAELFKQDVQAVFKRSFSIKEPVLIPIPLSKERLKERGFNQSVILASLIGQPILQPLVKIH
QSKQSKKKKNERLDQKRMFQIKQTDAIVQRDVILIDDIYTTGATIYDAARILKEAGVKSVSSFTLIRS

Nucleotide

• Length: 687 bp

>NTDB_id=401343 GKC22_RS15940 WP_189318694.1 3113465..3114151(-) (comFC) [Bacillus pumilus strain P48C1]
TTGATCTGCCTAATTTGTGAGGGGCATTTTGTCGCTGCTTTTACATGGAAATCATTACTTCTATTAAATGATGATCATCT
ATGTATAGCATGTAAGCATCACCTAGAAAAAATTCAACGCCCGATTTGTCCAGCTTGTGGGAGAGCACAGTCGAATGATC
AATTATGTCAAGACTGTTCCAGGTGGAAAGAACGCCCTGATTCTACTACAGTACTTGTGAAAAATAGGTCTGTTTATGCT
TACAACGATTTGATGAAAGATGTCCTTTCCCGCTTTAAATTTCGAGGTGATACAGCTTTAGCTGAGCTTTTTAAACAAGA
TGTCCAAGCAGTATTTAAGCGCTCCTTTTCAATTAAAGAACCTGTGCTCATCCCGATTCCTTTAAGTAAAGAAAGGCTAA
AGGAAAGAGGGTTTAATCAGTCAGTCATACTTGCTTCCTTGATTGGTCAGCCGATCCTGCAGCCGCTTGTGAAAATACAT
CAAAGCAAGCAGTCTAAGAAAAAGAAAAATGAACGTTTAGATCAAAAAAGAATGTTTCAAATCAAGCAGACAGATGCGAT
CGTTCAAAGGGATGTTATCTTAATTGACGACATCTATACAACGGGGGCCACCATTTATGATGCGGCAAGAATTTTAAAAG
AAGCAGGTGTCAAAAGTGTTTCCTCTTTTACGTTGATCCGTAGTTAA

Domains

Predicted by InterproScan.

• Double zinc ribbon domain (DZR_2) (3-59)

• Phosphoribosyl transferase domain (Pribosyltran) (156-226)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFC	Bacillus subtilis subsp. subtilis str. 168	50	100	0.504
comFC/cflB	Streptococcus mitis NCTC 12261	38.865	100	0.39
comFC/cflB	Streptococcus mitis SK321	38.865	100	0.39
comFC/cflB	Streptococcus pneumoniae Rx1	38.865	100	0.39
comFC/cflB	Streptococcus pneumoniae D39	38.865	100	0.39
comFC/cflB	Streptococcus pneumoniae R6	38.865	100	0.39
comFC/cflB	Streptococcus pneumoniae TIGR4	38.865	100	0.39