Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   GKC22_RS15950 Genome accession   NZ_CP046127
Coordinates   3114508..3115887 (-) Length   459 a.a.
NCBI ID   WP_302621044.1    Uniprot ID   -
Organism   Bacillus pumilus strain P48C1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3109508..3120887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKC22_RS15915 (GKC22_15785) flgL 3109688..3110599 (-) 912 WP_342689248.1 flagellar hook-associated protein FlgL -
  GKC22_RS15920 (GKC22_15790) flgK 3110609..3112129 (-) 1521 WP_342689249.1 flagellar hook-associated protein FlgK -
  GKC22_RS15925 (GKC22_15795) - 3112145..3112627 (-) 483 WP_034660146.1 flagellar protein FlgN -
  GKC22_RS15930 (GKC22_15800) flgM 3112646..3112909 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  GKC22_RS15935 (GKC22_15805) - 3112989..3113408 (-) 420 WP_034660147.1 TIGR03826 family flagellar region protein -
  GKC22_RS15940 comFC 3113465..3114151 (-) 687 WP_189318694.1 ComF family protein Machinery gene
  GKC22_RS15945 (GKC22_15815) - 3114148..3114441 (-) 294 WP_060597398.1 competence protein ComFB -
  GKC22_RS15950 (GKC22_15820) comFA 3114508..3115887 (-) 1380 WP_302621044.1 DEAD/DEAH box helicase Machinery gene
  GKC22_RS15955 (GKC22_15825) - 3116008..3116850 (-) 843 WP_034660152.1 DegV family protein -
  GKC22_RS15960 (GKC22_15830) degU 3117068..3117757 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  GKC22_RS15965 (GKC22_15835) degS 3117822..3118997 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  GKC22_RS15970 (GKC22_15840) - 3119219..3119887 (+) 669 WP_012011434.1 YigZ family protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 52643.81 Da        Isoelectric Point: 10.2906

>NTDB_id=401344 GKC22_RS15950 WP_302621044.1 3114508..3115887(-) (comFA) [Bacillus pumilus strain P48C1]
MNMDKAMELRQQLQSRHLLTAETRCSQSDLDWLEEKGFVIRTPAIERKANGLTCCRCGVSKKRYFAHTPCDMCQKDCVYC
RSCIMMGKTTECGFLYEWTGPQMEETCHTELTWQGNLSKGQKRASEKLIEAIKNKSDLLIWAVCGAGKTEVLFYGIKYAL
HQGMSVCIATPRTDVVLELEPRLKKAFQGMKIAVLYGGSPQRFQIAPLVIATTHQLMRYKHAFDVLIIDEVDAFPYSIDE
RLQFAVLKAMRKKGVRVYLSATPSKKMKRDVSRGQLEAIKIPLRFHKQPLPVPSFQWIGHWKKKLKKNQLPPKVMNWMQK
HITKKRRILLFVPSISTMKKVTKVLREHRLNVEGVSADDPDRKQKVQHFRDYKYDVLVTTTILERGVTIPNVQVGVLGAE
STIFTESALVQISGRAGRHPDFFKGDVIFFHFGLTRSMKQAKKHIVKMNDTAAKEFSEK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=401344 GKC22_RS15950 WP_302621044.1 3114508..3115887(-) (comFA) [Bacillus pumilus strain P48C1]
TTGAACATGGACAAAGCAATGGAACTAAGGCAGCAACTGCAGTCACGCCACCTGCTTACCGCTGAAACAAGATGCTCACA
GTCCGATTTGGATTGGCTGGAGGAGAAAGGGTTCGTCATCCGAACACCTGCTATTGAGAGGAAAGCAAATGGTCTTACTT
GCTGTAGATGTGGTGTATCAAAAAAGCGGTACTTTGCCCACACTCCGTGTGACATGTGTCAAAAAGATTGTGTGTACTGT
AGATCATGCATCATGATGGGGAAAACAACGGAATGTGGCTTTCTTTATGAATGGACGGGTCCACAAATGGAAGAAACATG
TCATACGGAATTAACATGGCAGGGAAACCTGTCTAAAGGACAAAAAAGAGCGTCCGAAAAATTGATCGAAGCGATAAAAA
ACAAATCTGACCTACTCATCTGGGCAGTTTGCGGGGCAGGGAAAACAGAGGTGCTCTTTTACGGAATTAAATATGCCTTA
CATCAAGGAATGAGTGTCTGCATTGCGACACCTAGAACAGATGTTGTCCTTGAACTAGAGCCGCGGCTTAAAAAAGCATT
TCAAGGAATGAAAATAGCTGTTCTTTATGGAGGAAGCCCTCAAAGGTTCCAAATAGCACCGCTAGTGATCGCCACAACTC
ATCAGTTGATGAGATACAAACATGCATTTGATGTGCTTATTATAGATGAAGTCGACGCCTTTCCTTATTCAATCGATGAA
CGTCTCCAATTTGCTGTTTTAAAGGCAATGAGAAAGAAAGGGGTTAGGGTTTATTTAAGTGCGACGCCCTCTAAGAAAAT
GAAAAGAGATGTATCTCGTGGACAACTAGAAGCCATAAAAATTCCTCTGCGCTTTCACAAACAACCGTTACCTGTCCCGT
CCTTTCAATGGATTGGACATTGGAAGAAGAAATTAAAAAAGAACCAGCTCCCACCTAAAGTAATGAATTGGATGCAGAAA
CATATCACAAAGAAGAGAAGGATTTTACTTTTTGTTCCTTCTATTTCGACCATGAAGAAGGTAACGAAGGTTCTTAGAGA
ACACCGCTTAAATGTAGAAGGGGTGTCTGCTGATGATCCAGACAGGAAACAAAAGGTCCAGCACTTCAGAGATTATAAAT
ACGATGTACTAGTTACAACCACCATTCTAGAAAGAGGCGTAACCATTCCAAATGTTCAAGTGGGGGTACTAGGTGCGGAA
TCTACTATCTTTACAGAGAGTGCACTTGTTCAGATTTCTGGTAGAGCAGGTAGACATCCCGATTTTTTTAAAGGAGATGT
TATCTTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAGCATATCGTAAAAATGAATGATACAGCTGCAA
AAGAGTTTTCTGAAAAATAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(116-264)

Helicase conserved C-terminal domain (Helicase_C)

(320-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

53.863

98.693

0.532

Multiple sequence alignment