Detailed information NTG0401346

Bioinformatically predicted

Overview

• Name: degS
• Type: Regulator
• Locus tag: GKC22_RS15965
• Genome accession: NZ_CP046127
• Coordinates: 3117822..3118997 (-)
• Length: 391 a.a.
• NCBI ID: WP_003213166.1
• Uniprot ID: -
• Organism: Bacillus pumilus strain P48C1
• Function: phosphorylation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3112822..3123997

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GKC22_RS15935 (GKC22_15805)	-	3112989..3113408 (-)	420	WP_034660147.1	TIGR03826 family flagellar region protein	-
GKC22_RS15940	comFC	3113465..3114151 (-)	687	WP_189318694.1	ComF family protein	Machinery gene
GKC22_RS15945 (GKC22_15815)	-	3114148..3114441 (-)	294	WP_060597398.1	competence protein ComFB	-
GKC22_RS15950 (GKC22_15820)	comFA	3114508..3115887 (-)	1380	WP_302621044.1	DEAD/DEAH box helicase	Machinery gene
GKC22_RS15955 (GKC22_15825)	-	3116008..3116850 (-)	843	WP_034660152.1	DegV family protein	-
GKC22_RS15960 (GKC22_15830)	degU	3117068..3117757 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
GKC22_RS15965 (GKC22_15835)	degS	3117822..3118997 (-)	1176	WP_003213166.1	sensor histidine kinase	Regulator
GKC22_RS15970 (GKC22_15840)	-	3119219..3119887 (+)	669	WP_012011434.1	YigZ family protein	-
GKC22_RS15975 (GKC22_15845)	-	3119872..3120963 (+)	1092	WP_034660153.1	LCP family protein	-
GKC22_RS15980 (GKC22_15850)	-	3120999..3122066 (-)	1068	WP_034660156.1	MraY family glycosyltransferase	-
GKC22_RS15985 (GKC22_15855)	-	3122201..3123400 (-)	1200	WP_080869554.1	glycosyltransferase	-

Sequence

Protein

• Length: 391 a.a.
• Molecular weight: 45523.25 Da
• Isoelectric Point: 5.8757

>NTDB_id=401346 GKC22_RS15965 WP_003213166.1 3117822..3118997(-) (degS) [Bacillus pumilus strain P48C1]
MTTPKMDPKLLDSIIMKMLSTVDGSKDEVFRIGEQSRQQYESLVEELKQIKQQVNEVIDFGDKLEVHTRHARNRLSEVSR
NFNKFSEEEIREAYEKAHNLQVELTMIQQREKQLRERRDDLERRLLSLQDVIERSETLVSQITVVLNYLNQDLRQVGVLL
EDAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEEGFKEIRSLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLNTIEEYDGKTKITFQCLGDTESERIASQFEVALFRLAQEAVTNSLKHSEAEEISVKVEV
TKDFVTLIIKDDGKGFDMKDVKTNKNKSFGLLGMKERVDLLEGKMTIDSKIGLGTFIMIRVPLTLQNKIVK

Nucleotide

• Length: 1176 bp

>NTDB_id=401346 GKC22_RS15965 WP_003213166.1 3117822..3118997(-) (degS) [Bacillus pumilus strain P48C1]
ATGACAACACCTAAAATGGATCCGAAATTATTGGATTCAATCATCATGAAAATGCTAAGTACAGTTGATGGCAGCAAGGA
CGAAGTATTTAGGATAGGCGAACAGTCCCGTCAACAATATGAAAGCCTAGTAGAAGAGCTGAAGCAAATCAAGCAGCAAG
TAAACGAAGTAATTGATTTTGGGGATAAACTCGAAGTCCATACGAGACATGCTAGAAATCGCTTATCTGAGGTCAGCAGA
AACTTCAACAAATTTAGCGAAGAAGAAATACGGGAGGCCTACGAAAAAGCACATAATCTGCAAGTGGAACTCACCATGAT
CCAGCAGCGCGAAAAGCAGCTGAGAGAAAGAAGAGACGATCTGGAAAGACGATTGTTAAGCCTGCAAGACGTCATTGAAC
GCTCTGAAACGCTTGTGAGTCAGATCACAGTTGTTCTCAACTATCTCAATCAGGACTTACGCCAAGTTGGCGTGTTACTT
GAAGATGCTCAGGCAAAACAAGATTTTGGACTAAGAATTATTGAAGCCCAAGAAGAAGAACGCAAAAGGGTGTCCCGGGA
AATTCATGACGGTCCGGCCCAGATGCTGGCAAACGTGATGATGCGTTCCGAATTAATTGAACGGATTTTCAGAGACCGTG
GGACAGAAGAAGGCTTTAAAGAAATTAGAAGTCTCAGACAGAATGTGCGAAATGCTCTGTACGAAGTGAGAAGAATCATT
TATGATTTAAGACCAATGGCTTTAGATGATTTGGGTCTCATTCCGACGCTAAGAAAATATTTAAACACAATCGAAGAGTA
TGATGGAAAAACCAAGATTACGTTCCAATGCCTAGGGGATACAGAAAGCGAAAGAATTGCTTCTCAATTTGAAGTGGCAC
TGTTTAGACTAGCCCAAGAAGCTGTCACAAATTCACTAAAGCATTCCGAAGCTGAAGAAATCTCTGTAAAAGTAGAAGTG
ACGAAAGACTTTGTCACGTTAATTATCAAAGACGATGGAAAAGGCTTTGATATGAAAGATGTGAAAACAAACAAAAACAA
ATCCTTCGGTTTACTTGGCATGAAAGAACGCGTAGACTTACTGGAAGGTAAAATGACCATAGACTCAAAAATAGGTCTAG
GGACATTCATCATGATTCGCGTGCCATTAACATTGCAAAATAAAATTGTAAAATAG

Domains

Predicted by InterproScan.

• Sensor protein DegS (DegS) (12-170)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (291-384)

• Histidine kinase (HisKA_3) (180-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
degS	Bacillus subtilis subsp. subtilis str. 168	85.455	98.465	0.841