Detailed information
Bioinformatically predicted
Overview
| Name | clpP | Type | Regulator |
| Locus tag | GKC22_RS15535 | Genome accession | NZ_CP046127 |
| Coordinates | 3032424..3033020 (+) | Length | 198 a.a. |
| NCBI ID | WP_034660066.1 | Uniprot ID | - |
| Organism | Bacillus pumilus strain P48C1 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 3027424..3038020
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GKC22_RS15515 (GKC22_15385) | nikA | 3027741..3029372 (-) | 1632 | WP_034660062.1 | nickel ABC transporter substrate-binding protein | - |
| GKC22_RS15520 (GKC22_15390) | - | 3029495..3030664 (-) | 1170 | WP_342689236.1 | macrolide family glycosyltransferase | - |
| GKC22_RS15525 (GKC22_15395) | - | 3030833..3031723 (-) | 891 | WP_223249916.1 | ABC transporter substrate-binding protein | - |
| GKC22_RS15535 (GKC22_15405) | clpP | 3032424..3033020 (+) | 597 | WP_034660066.1 | ATP-dependent Clp endopeptidase proteolytic subunit ClpP | Regulator |
| GKC22_RS15540 (GKC22_15410) | - | 3033080..3033658 (-) | 579 | WP_034660067.1 | TIGR00730 family Rossman fold protein | - |
| GKC22_RS15545 (GKC22_15415) | - | 3033796..3034137 (+) | 342 | WP_034660068.1 | MazG-like family protein | - |
| GKC22_RS15550 (GKC22_15420) | - | 3034166..3035788 (-) | 1623 | WP_034660070.1 | SulP family inorganic anion transporter | - |
| GKC22_RS15555 (GKC22_15425) | - | 3035826..3036407 (-) | 582 | WP_034660712.1 | carbonic anhydrase | - |
| GKC22_RS15560 (GKC22_15430) | - | 3036961..3037938 (+) | 978 | WP_268495318.1 | D-glycerate dehydrogenase | - |
Sequence
Protein
Download Length: 198 a.a. Molecular weight: 21832.99 Da Isoelectric Point: 4.6141
>NTDB_id=401342 GKC22_RS15535 WP_034660066.1 3032424..3033020(+) (clpP) [Bacillus pumilus strain P48C1]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT
MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILSLRDKLNQVLAERTGQ
PIEVIERDTDRDNFKTAEEALEYGLIDKVLTRNSEEQK
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT
MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILSLRDKLNQVLAERTGQ
PIEVIERDTDRDNFKTAEEALEYGLIDKVLTRNSEEQK
Nucleotide
Download Length: 597 bp
>NTDB_id=401342 GKC22_RS15535 WP_034660066.1 3032424..3033020(+) (clpP) [Bacillus pumilus strain P48C1]
ATGAATTTAATACCTACAGTCATTGAGCAAACAAATCGTGGGGAAAGAGCTTACGACATTTATTCTCGTCTTTTAAAAGA
CCGTATTATCATGCTTGGTTCTGCGATCGATGACAATGTTGCCAACTCCATCGTGTCACAGCTGCTTTTCTTAGAAGCTG
AAGATCCAGAAAAAGATATTTCTATCTACATTAACAGCCCTGGCGGTTCGATCACAGCTGGTATGGCCATTTACGATACG
ATGCAATTTATTAAACCAAAGGTATCAACCATTTGTATTGGTATGGCTGCATCTATGGGTGCGTTCCTGCTTGCTGCTGG
TGAAAAAGGTAAGCGTTATGCCCTTCCAAACAGTGAAGTCATGATTCACCAACCACTAGGTGGTGCCCAAGGTCAAGCAA
CAGAAATTGAAATTGCGGCAAAACGAATCCTTTCTTTACGCGATAAACTGAACCAAGTACTAGCTGAACGTACTGGTCAG
CCAATTGAAGTGATTGAGCGCGATACAGATCGTGACAACTTCAAAACAGCGGAAGAAGCACTTGAATACGGACTTATTGA
CAAAGTCTTGACCCGTAATTCAGAAGAACAAAAATAA
ATGAATTTAATACCTACAGTCATTGAGCAAACAAATCGTGGGGAAAGAGCTTACGACATTTATTCTCGTCTTTTAAAAGA
CCGTATTATCATGCTTGGTTCTGCGATCGATGACAATGTTGCCAACTCCATCGTGTCACAGCTGCTTTTCTTAGAAGCTG
AAGATCCAGAAAAAGATATTTCTATCTACATTAACAGCCCTGGCGGTTCGATCACAGCTGGTATGGCCATTTACGATACG
ATGCAATTTATTAAACCAAAGGTATCAACCATTTGTATTGGTATGGCTGCATCTATGGGTGCGTTCCTGCTTGCTGCTGG
TGAAAAAGGTAAGCGTTATGCCCTTCCAAACAGTGAAGTCATGATTCACCAACCACTAGGTGGTGCCCAAGGTCAAGCAA
CAGAAATTGAAATTGCGGCAAAACGAATCCTTTCTTTACGCGATAAACTGAACCAAGTACTAGCTGAACGTACTGGTCAG
CCAATTGAAGTGATTGAGCGCGATACAGATCGTGACAACTTCAAAACAGCGGAAGAAGCACTTGAATACGGACTTATTGA
CAAAGTCTTGACCCGTAATTCAGAAGAACAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpP | Bacillus subtilis subsp. subtilis str. 168 |
92.893 |
99.495 |
0.924 |
| clpP | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
68.063 |
96.465 |
0.657 |
| clpP | Streptococcus thermophilus LMG 18311 |
59.067 |
97.475 |
0.576 |
| clpP | Streptococcus thermophilus LMD-9 |
59.067 |
97.475 |
0.576 |
| clpP | Lactococcus lactis subsp. cremoris KW2 |
57.216 |
97.98 |
0.561 |
| clpP | Streptococcus pneumoniae D39 |
56.701 |
97.98 |
0.556 |
| clpP | Streptococcus pneumoniae Rx1 |
56.701 |
97.98 |
0.556 |
| clpP | Streptococcus pneumoniae R6 |
56.701 |
97.98 |
0.556 |
| clpP | Streptococcus pneumoniae TIGR4 |
56.701 |
97.98 |
0.556 |
| clpP | Lactococcus lactis subsp. lactis strain DGCC12653 |
55.155 |
97.98 |
0.54 |
| clpP | Streptococcus pyogenes JRS4 |
55.44 |
97.475 |
0.54 |
| clpP | Streptococcus pyogenes MGAS315 |
55.44 |
97.475 |
0.54 |
| clpP | Streptococcus mutans UA159 |
54.639 |
97.98 |
0.535 |