Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   GJV39_RS08330 Genome accession   NZ_CP046114
Coordinates   1647856..1649118 (-) Length   420 a.a.
NCBI ID   WP_005712502.1    Uniprot ID   -
Organism   Glaesserella parasuis strain SCW0912     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1642856..1654118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJV39_RS08295 (GJV39_08295) - 1642869..1643288 (+) 420 WP_005714137.1 hotdog fold thioesterase -
  GJV39_RS08300 (GJV39_08300) - 1643479..1644081 (-) 603 Protein_1639 transposase -
  GJV39_RS08305 (GJV39_08305) trxA 1644672..1644986 (-) 315 WP_005712493.1 thioredoxin -
  GJV39_RS08310 (GJV39_08310) - 1645283..1645912 (-) 630 WP_010785950.1 LysE family transporter -
  GJV39_RS08315 (GJV39_08315) - 1645914..1646384 (-) 471 WP_005712497.1 phosphatidylglycerophosphatase A -
  GJV39_RS08320 (GJV39_08320) thiL 1646387..1647355 (-) 969 WP_021110497.1 thiamine-phosphate kinase -
  GJV39_RS08325 (GJV39_08325) nusB 1647364..1647777 (-) 414 WP_010785952.1 transcription antitermination factor NusB -
  GJV39_RS08330 (GJV39_08330) comE 1647856..1649118 (-) 1263 WP_005712502.1 type IV pilus secretin PilQ Machinery gene
  GJV39_RS08335 (GJV39_08335) comD 1649128..1649469 (-) 342 WP_230205898.1 hypothetical protein Machinery gene
  GJV39_RS08340 (GJV39_08340) comC 1649514..1650044 (-) 531 WP_015940159.1 hypothetical protein Machinery gene
  GJV39_RS08345 (GJV39_08345) comB 1650041..1650562 (-) 522 WP_005712507.1 hypothetical protein Machinery gene
  GJV39_RS08350 (GJV39_08350) comA 1650538..1651215 (-) 678 WP_005712510.1 hypothetical protein Machinery gene
  GJV39_RS08355 (GJV39_08355) - 1651369..1653924 (+) 2556 WP_035498541.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 47051.05 Da        Isoelectric Point: 8.9182

>NTDB_id=401139 GJV39_RS08330 WP_005712502.1 1647856..1649118(-) (comE) [Glaesserella parasuis strain SCW0912]
MRYLFLLFFATFPVLANQQISLSIKNAPTAEIIGYLAEETGKNITISDEIKDTKNFRVEKSHFDEILNSLIKTHQLNLKK
ENGIYYIHQAQEHKQHTTAQLVNALPKLITKTIKLHYSKASEVIESLTKGQGNLLSENGYLHFDDRSNSIIVKDSAASVK
NFTQLIETLDKPTEQIAIEARIVTISSEHLQQLGVRWGLFSPNENHYKLAGNLEGNGLTTNNLNVNFPVNPSASVALQIA
AINSRVLHLELTALESENNIEIIASPRLLTTDKKPASIKQGTEIPYAMYSKKKEITDIEFREAVLGLEVTPHISKQNQIL
LDLAISQNSPNNQMNNMMATIDKQEINTQVLAKHGETIVLGGIFQHLIAKGEDKVPLLGSIPVIKRLFSQNRDKISKREL
VIFVTPYIVKSEKMGAEKQK

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=401139 GJV39_RS08330 WP_005712502.1 1647856..1649118(-) (comE) [Glaesserella parasuis strain SCW0912]
ATGCGTTATTTATTCCTGCTATTCTTTGCTACTTTTCCTGTATTAGCAAACCAACAAATTTCGCTTTCTATAAAAAATGC
CCCTACGGCAGAAATTATTGGTTATTTAGCTGAAGAAACGGGAAAAAATATTACGATTTCAGATGAGATTAAAGATACAA
AAAATTTCAGAGTAGAAAAAAGCCATTTTGATGAGATATTAAATAGTTTAATCAAAACACATCAATTAAATTTAAAAAAA
GAAAATGGCATTTACTATATTCATCAAGCCCAAGAACATAAACAACATACTACGGCACAATTAGTTAATGCTCTGCCTAA
ATTAATCACCAAAACAATCAAGTTACACTATTCCAAAGCCTCTGAAGTAATAGAGTCTTTGACAAAAGGGCAAGGCAACT
TGCTATCAGAGAATGGTTATCTTCATTTTGATGATCGCAGTAATAGTATTATCGTCAAAGACAGTGCCGCATCGGTTAAA
AACTTTACTCAACTTATTGAAACCCTAGATAAACCAACGGAACAAATTGCAATTGAAGCCCGAATTGTCACGATCAGCAG
TGAACATTTACAACAACTTGGCGTGCGTTGGGGCTTATTTTCCCCTAACGAAAATCACTACAAATTGGCAGGAAACTTAG
AGGGCAACGGATTAACTACCAACAACTTAAACGTAAATTTTCCAGTAAATCCGTCCGCTTCCGTTGCCTTACAAATTGCC
GCTATCAACAGCCGTGTACTTCATTTAGAACTCACCGCATTAGAGAGCGAAAATAACATTGAGATCATTGCAAGCCCTCG
CTTACTCACAACAGATAAAAAACCAGCGAGTATCAAACAAGGTACAGAGATTCCTTATGCAATGTACAGTAAGAAAAAGG
AAATCACCGATATTGAATTTCGTGAAGCGGTTTTGGGGCTAGAAGTCACGCCACATATTTCTAAACAAAATCAGATTTTG
TTAGATCTTGCCATTAGCCAAAATTCGCCAAATAACCAGATGAACAATATGATGGCAACGATTGATAAACAAGAAATTAA
TACACAAGTCCTTGCTAAACACGGCGAAACCATCGTATTAGGCGGTATTTTTCAACATCTGATCGCCAAAGGCGAAGATA
AAGTCCCGCTGTTAGGCAGTATCCCCGTGATTAAACGCTTATTTAGCCAAAACCGAGATAAAATCTCTAAACGGGAGCTG
GTTATTTTTGTTACGCCTTATATTGTAAAATCTGAAAAAATGGGAGCGGAAAAGCAGAAATAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(110-175)

Bacterial type II and III secretion system protein (Secretin)

(253-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Glaesserella parasuis strain SC1401

96.667

100

0.967
  comE Haemophilus influenzae Rd KW20

52.706

100

0.533
  comE Haemophilus influenzae 86-028NP

51.765

100

0.524
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

37.44

98.571

0.369
  pilQ Vibrio cholerae strain A1552

37.44

98.571

0.369
  pilQ Vibrio campbellii strain DS40M4

36.019

100

0.362

Multiple sequence alignment