Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Machinery gene
Locus tag   GJV39_RS08345 Genome accession   NZ_CP046114
Coordinates   1650041..1650562 (-) Length   173 a.a.
NCBI ID   WP_005712507.1    Uniprot ID   A0A836ME07
Organism   Glaesserella parasuis strain SCW0912     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1645041..1655562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJV39_RS08310 (GJV39_08310) - 1645283..1645912 (-) 630 WP_010785950.1 LysE family transporter -
  GJV39_RS08315 (GJV39_08315) - 1645914..1646384 (-) 471 WP_005712497.1 phosphatidylglycerophosphatase A -
  GJV39_RS08320 (GJV39_08320) thiL 1646387..1647355 (-) 969 WP_021110497.1 thiamine-phosphate kinase -
  GJV39_RS08325 (GJV39_08325) nusB 1647364..1647777 (-) 414 WP_010785952.1 transcription antitermination factor NusB -
  GJV39_RS08330 (GJV39_08330) comE 1647856..1649118 (-) 1263 WP_005712502.1 type IV pilus secretin PilQ Machinery gene
  GJV39_RS08335 (GJV39_08335) comD 1649128..1649469 (-) 342 WP_230205898.1 hypothetical protein Machinery gene
  GJV39_RS08340 (GJV39_08340) comC 1649514..1650044 (-) 531 WP_015940159.1 hypothetical protein Machinery gene
  GJV39_RS08345 (GJV39_08345) comB 1650041..1650562 (-) 522 WP_005712507.1 hypothetical protein Machinery gene
  GJV39_RS08350 (GJV39_08350) comA 1650538..1651215 (-) 678 WP_005712510.1 hypothetical protein Machinery gene
  GJV39_RS08355 (GJV39_08355) - 1651369..1653924 (+) 2556 WP_035498541.1 penicillin-binding protein 1A -
  GJV39_RS08360 (GJV39_08360) aroK 1654154..1654675 (+) 522 WP_015940157.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 20324.01 Da        Isoelectric Point: 7.3557

>NTDB_id=401142 GJV39_RS08345 WP_005712507.1 1650041..1650562(-) (comB) [Glaesserella parasuis strain SCW0912]
MEWQGINLNGYRQQQWLKQSQKNLKHLTACIVISTLLALLISWQNQQQQHQFHTLAQQRQQSQEQQTALSQQIEQLTLQS
QNKSTQSLENRQITAFLNYLLGIQLSGIIEIAQLYQAENTVFKLKGKVSSPTQFSQLEQQLKAMNYIYQIEQFETREKSE
IEFSLHIDLKEKE

Nucleotide


Download         Length: 522 bp        

>NTDB_id=401142 GJV39_RS08345 WP_005712507.1 1650041..1650562(-) (comB) [Glaesserella parasuis strain SCW0912]
ATGGAATGGCAAGGTATCAATCTAAACGGCTATCGCCAACAGCAATGGTTGAAACAGTCGCAAAAAAACCTCAAGCATCT
CACCGCTTGCATTGTGATTAGCACACTACTGGCGTTACTTATCAGTTGGCAAAATCAACAGCAACAACATCAATTTCACA
CTTTGGCTCAACAGCGACAACAAAGCCAAGAGCAACAAACCGCATTAAGCCAGCAGATTGAACAACTGACTTTGCAATCA
CAAAATAAAAGCACACAAAGCCTAGAGAACAGACAGATTACCGCATTTTTGAATTATCTGTTAGGCATTCAATTATCAGG
GATTATTGAGATAGCCCAACTATACCAAGCAGAAAATACCGTCTTTAAACTCAAAGGCAAGGTGTCTAGCCCTACTCAAT
TTAGCCAGCTTGAACAACAATTAAAAGCAATGAATTACATTTATCAAATAGAACAATTTGAAACGCGTGAAAAAAGCGAG
ATTGAATTTAGCCTACATATTGATTTAAAGGAAAAAGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A836ME07

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Glaesserella parasuis strain SC1401

97.11

100

0.971

Multiple sequence alignment