Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   GJV39_RS08350 Genome accession   NZ_CP046114
Coordinates   1650538..1651215 (-) Length   225 a.a.
NCBI ID   WP_005712510.1    Uniprot ID   -
Organism   Glaesserella parasuis strain SCW0912     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1645538..1656215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJV39_RS08315 (GJV39_08315) - 1645914..1646384 (-) 471 WP_005712497.1 phosphatidylglycerophosphatase A -
  GJV39_RS08320 (GJV39_08320) thiL 1646387..1647355 (-) 969 WP_021110497.1 thiamine-phosphate kinase -
  GJV39_RS08325 (GJV39_08325) nusB 1647364..1647777 (-) 414 WP_010785952.1 transcription antitermination factor NusB -
  GJV39_RS08330 (GJV39_08330) comE 1647856..1649118 (-) 1263 WP_005712502.1 type IV pilus secretin PilQ Machinery gene
  GJV39_RS08335 (GJV39_08335) comD 1649128..1649469 (-) 342 WP_230205898.1 hypothetical protein Machinery gene
  GJV39_RS08340 (GJV39_08340) comC 1649514..1650044 (-) 531 WP_015940159.1 hypothetical protein Machinery gene
  GJV39_RS08345 (GJV39_08345) comB 1650041..1650562 (-) 522 WP_005712507.1 hypothetical protein Machinery gene
  GJV39_RS08350 (GJV39_08350) comA 1650538..1651215 (-) 678 WP_005712510.1 hypothetical protein Machinery gene
  GJV39_RS08355 (GJV39_08355) - 1651369..1653924 (+) 2556 WP_035498541.1 penicillin-binding protein 1A -
  GJV39_RS08360 (GJV39_08360) aroK 1654154..1654675 (+) 522 WP_015940157.1 shikimate kinase AroK -
  GJV39_RS08365 (GJV39_08365) aroB 1654690..1655778 (+) 1089 WP_021110495.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 26299.31 Da        Isoelectric Point: 7.3026

>NTDB_id=401143 GJV39_RS08350 WP_005712510.1 1650538..1651215(-) (comA) [Glaesserella parasuis strain SCW0912]
MGKFFQFRTTPQLKPIQVGFFWQENTACIVYFEQEQPHTFYFSSKVEADSFLQQFPFNYQLIQGISHQHIWRKTLILPEL
HSHLKQAEQIIRVLKQSLPLALSEVNIDYHITPLAESHLCQLNLYALRKSNSFDPTAILDCELYCLLRAVGFLTKITETQ
ILEHSFHIQDKFIHFQNQRIIVEKQNNSTKPIIEVDGLPQAQHFPHFYPYLIALGASLWNGKVSI

Nucleotide


Download         Length: 678 bp        

>NTDB_id=401143 GJV39_RS08350 WP_005712510.1 1650538..1651215(-) (comA) [Glaesserella parasuis strain SCW0912]
ATGGGTAAATTCTTTCAATTTCGTACAACACCGCAACTCAAACCTATTCAAGTTGGCTTTTTCTGGCAAGAAAATACCGC
TTGTATCGTCTATTTTGAACAAGAACAACCTCACACCTTTTACTTTTCAAGCAAAGTAGAAGCGGATAGTTTCCTACAAC
AATTTCCCTTTAACTATCAGCTTATTCAAGGCATTTCTCATCAGCATATTTGGCGAAAAACCTTGATACTGCCAGAGCTA
CATTCCCATTTAAAACAAGCTGAGCAAATCATTCGTGTACTCAAACAGAGCCTACCTTTAGCTTTATCTGAAGTAAACAT
TGATTACCACATTACCCCTTTAGCCGAAAGCCACCTTTGCCAGCTTAATCTATATGCTCTAAGAAAAAGCAACAGCTTTG
ACCCAACGGCTATTTTAGATTGCGAACTCTACTGCCTACTACGAGCGGTAGGATTTCTGACAAAAATAACGGAAACGCAA
ATTCTTGAACACAGTTTCCACATTCAAGACAAATTTATTCACTTTCAAAATCAACGAATTATCGTCGAAAAGCAGAATAA
TAGCACCAAACCAATCATTGAAGTGGACGGCTTGCCCCAAGCTCAACACTTTCCCCATTTTTATCCTTATCTTATTGCAT
TAGGAGCGAGCTTATGGAATGGCAAGGTATCAATCTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Glaesserella parasuis strain SC1401

98.667

100

0.987

Multiple sequence alignment