Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | GJV39_RS08335 | Genome accession | NZ_CP046114 |
| Coordinates | 1649128..1649469 (-) | Length | 113 a.a. |
| NCBI ID | WP_230205898.1 | Uniprot ID | - |
| Organism | Glaesserella parasuis strain SCW0912 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1644128..1654469
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GJV39_RS08305 (GJV39_08305) | trxA | 1644672..1644986 (-) | 315 | WP_005712493.1 | thioredoxin | - |
| GJV39_RS08310 (GJV39_08310) | - | 1645283..1645912 (-) | 630 | WP_010785950.1 | LysE family transporter | - |
| GJV39_RS08315 (GJV39_08315) | - | 1645914..1646384 (-) | 471 | WP_005712497.1 | phosphatidylglycerophosphatase A | - |
| GJV39_RS08320 (GJV39_08320) | thiL | 1646387..1647355 (-) | 969 | WP_021110497.1 | thiamine-phosphate kinase | - |
| GJV39_RS08325 (GJV39_08325) | nusB | 1647364..1647777 (-) | 414 | WP_010785952.1 | transcription antitermination factor NusB | - |
| GJV39_RS08330 (GJV39_08330) | comE | 1647856..1649118 (-) | 1263 | WP_005712502.1 | type IV pilus secretin PilQ | Machinery gene |
| GJV39_RS08335 (GJV39_08335) | comD | 1649128..1649469 (-) | 342 | WP_230205898.1 | hypothetical protein | Machinery gene |
| GJV39_RS08340 (GJV39_08340) | comC | 1649514..1650044 (-) | 531 | WP_015940159.1 | hypothetical protein | Machinery gene |
| GJV39_RS08345 (GJV39_08345) | comB | 1650041..1650562 (-) | 522 | WP_005712507.1 | hypothetical protein | Machinery gene |
| GJV39_RS08350 (GJV39_08350) | comA | 1650538..1651215 (-) | 678 | WP_005712510.1 | hypothetical protein | Machinery gene |
| GJV39_RS08355 (GJV39_08355) | - | 1651369..1653924 (+) | 2556 | WP_035498541.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 113 a.a. Molecular weight: 13177.90 Da Isoelectric Point: 4.8667
>NTDB_id=401140 GJV39_RS08335 WP_230205898.1 1649128..1649469(-) (comD) [Glaesserella parasuis strain SCW0912]
MADPFYAKENAQDQPQTAKDQNKTTACTPTEKVNEIHLTTDFDKLQLIGIIQIDDKIRAIFIDDKKQLIDLYPNDYLSHS
FIQIKEIDFKSVSYIDWQKTENCQSPKLFTSKF
MADPFYAKENAQDQPQTAKDQNKTTACTPTEKVNEIHLTTDFDKLQLIGIIQIDDKIRAIFIDDKKQLIDLYPNDYLSHS
FIQIKEIDFKSVSYIDWQKTENCQSPKLFTSKF
Nucleotide
Download Length: 342 bp
>NTDB_id=401140 GJV39_RS08335 WP_230205898.1 1649128..1649469(-) (comD) [Glaesserella parasuis strain SCW0912]
ATGGCAGATCCTTTTTATGCCAAGGAAAATGCCCAAGATCAGCCACAAACGGCAAAAGATCAAAACAAAACGACCGCTTG
TACGCCAACAGAGAAGGTGAACGAAATTCACCTCACCACAGATTTTGATAAATTACAGCTTATCGGCATTATTCAGATCG
ACGATAAAATTCGAGCGATTTTTATAGATGATAAAAAACAGCTTATAGATTTATATCCTAACGACTATTTAAGCCATTCC
TTTATTCAAATTAAAGAGATTGATTTTAAATCGGTTAGTTATATTGATTGGCAAAAAACAGAAAATTGCCAATCCCCTAA
ATTGTTTACTTCAAAATTTTAG
ATGGCAGATCCTTTTTATGCCAAGGAAAATGCCCAAGATCAGCCACAAACGGCAAAAGATCAAAACAAAACGACCGCTTG
TACGCCAACAGAGAAGGTGAACGAAATTCACCTCACCACAGATTTTGATAAATTACAGCTTATCGGCATTATTCAGATCG
ACGATAAAATTCGAGCGATTTTTATAGATGATAAAAAACAGCTTATAGATTTATATCCTAACGACTATTTAAGCCATTCC
TTTATTCAAATTAAAGAGATTGATTTTAAATCGGTTAGTTATATTGATTGGCAAAAAACAGAAAATTGCCAATCCCCTAA
ATTGTTTACTTCAAAATTTTAG
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Glaesserella parasuis strain SC1401 |
92.92 |
100 |
0.929 |