Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   GJQ55_RS11925 Genome accession   NZ_CP046056
Coordinates   2515711..2517834 (-) Length   707 a.a.
NCBI ID   WP_228345188.1    Uniprot ID   -
Organism   Venatoribacter cucullus strain ASxL5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2510711..2522834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJQ55_RS11910 (GJQ55_11840) - 2512550..2514058 (-) 1509 WP_228345185.1 AAA family ATPase -
  GJQ55_RS11915 (GJQ55_11845) aroB 2514086..2515186 (-) 1101 WP_228345186.1 3-dehydroquinate synthase -
  GJQ55_RS11920 (GJQ55_11850) aroK 2515192..2515707 (-) 516 WP_228345187.1 shikimate kinase AroK -
  GJQ55_RS11925 (GJQ55_11855) pilQ 2515711..2517834 (-) 2124 WP_228345188.1 type IV pilus secretin PilQ family protein Machinery gene
  GJQ55_RS11930 (GJQ55_11860) - 2517839..2518372 (-) 534 WP_228345189.1 pilus assembly protein PilP -
  GJQ55_RS11935 (GJQ55_11865) - 2518369..2519034 (-) 666 WP_228345190.1 type 4a pilus biogenesis protein PilO -
  GJQ55_RS11940 (GJQ55_11870) - 2519038..2519586 (-) 549 WP_228345191.1 PilN domain-containing protein -
  GJQ55_RS11945 (GJQ55_11875) pilM 2519573..2520646 (-) 1074 WP_228346793.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 707 a.a.        Molecular weight: 76362.87 Da        Isoelectric Point: 4.7709

>NTDB_id=400746 GJQ55_RS11925 WP_228345188.1 2515711..2517834(-) (pilQ) [Venatoribacter cucullus strain ASxL5]
MNMVKRVRVAIKSVPVLLLTMLAANASALTLTDMTFSALPGDVTEVRLDFDGTPPAISGYTIEQPARIAIDLPATDNGLK
TRRHEIGSGNARSAVVVATKDRSRIVFNLTRAVGYTTRVEGNAVLLRIGQTESDKVFAAQPAAPAGSAQTPVAAASSARD
MRVVNVDFRRGQQGEGQVQIMLSDDRAAANIRREGTKIIAELDNVRLPDNLSRRLDVTDFSTPVRFVDARAEGRGTRIVI
EPNGDEFEYLAYQTDRLLSINVSVLPPEQKEDRKKQMFPFTGEKLSLNFQNIEVRAVLQLIADFTGMNLVASDTVQGSIT
LRLQNVPWDQALDLVLKTKGLGKRQMGSVLLIAPAEEIAAREKIELEAVRQVDELAPLVTEYMQLKYAKASVLVNLLTSE
KGLLSERGSAVVDERTNTLLMKDTAKNLEKVREALMMLDVPVRQVLIEARIVVASTSVGEEMGVKWGGAGYKNNGSNWTT
IGGSQQTLTEGNQILFDRASGSAAGSSAIDIGAANMVDFGVTNASASTFAIGYQTADYLLDLELAAIETDGRAEIVSQPR
VITADGQTASIESGTEIPYQEASSSGATSVSFKSAVLKLEVTPQITPDDRIIMDLVINQDSVGELTAAGPSINTNSVQTQ
VLVDNGETVVLGGIFRSEEIVSISKTPFFGDLPLIGALFRYTNRADDKSELLVFITPRLVKDSLTNR

Nucleotide


Download         Length: 2124 bp        

>NTDB_id=400746 GJQ55_RS11925 WP_228345188.1 2515711..2517834(-) (pilQ) [Venatoribacter cucullus strain ASxL5]
ATGAACATGGTTAAGCGCGTACGTGTGGCAATTAAGTCAGTGCCGGTCCTGCTGCTGACGATGCTGGCGGCTAATGCCTC
GGCTCTGACCCTGACGGATATGACCTTCTCGGCGTTGCCCGGTGATGTCACGGAGGTGCGACTCGATTTTGACGGCACAC
CGCCCGCCATCAGTGGCTACACCATTGAACAGCCGGCCCGGATCGCTATCGACTTACCTGCTACTGACAATGGTCTGAAA
ACCCGTCGCCATGAAATCGGCTCCGGCAATGCCCGCAGCGCGGTGGTGGTGGCAACCAAAGATCGTTCCCGCATTGTGTT
TAATCTGACCCGGGCGGTGGGTTACACCACCCGCGTTGAAGGTAATGCTGTGCTGCTGCGTATTGGCCAGACCGAAAGCG
ATAAAGTGTTTGCCGCCCAACCTGCTGCCCCGGCCGGCAGCGCTCAGACCCCGGTTGCTGCCGCATCTTCAGCCCGTGAT
ATGCGTGTCGTGAATGTCGATTTCCGCCGTGGTCAGCAAGGTGAAGGCCAGGTGCAGATTATGCTCAGCGATGATCGTGC
CGCTGCCAATATCCGTCGTGAAGGCACCAAGATTATTGCCGAGCTGGATAACGTCCGCCTGCCGGATAACCTCAGCCGTC
GTCTGGATGTCACCGATTTTTCCACCCCGGTCCGCTTTGTCGATGCCCGCGCTGAAGGTCGTGGTACCCGCATTGTGATT
GAGCCGAATGGTGATGAATTTGAATATCTGGCCTACCAGACCGATCGTCTGCTGTCGATCAACGTCTCTGTGTTGCCGCC
GGAACAAAAAGAAGACCGCAAAAAGCAGATGTTCCCGTTCACCGGCGAAAAGCTGTCGCTGAACTTCCAGAACATCGAAG
TGCGCGCCGTACTGCAGCTGATTGCTGATTTCACCGGCATGAACCTGGTGGCGTCCGATACCGTGCAGGGCAGCATTACC
CTGCGTCTGCAGAATGTACCCTGGGATCAGGCGCTGGATCTGGTGCTGAAAACCAAAGGTCTGGGCAAGCGCCAGATGGG
CTCGGTTCTGCTGATTGCACCGGCGGAAGAAATTGCCGCGCGGGAAAAAATCGAGCTGGAAGCTGTGCGTCAGGTCGACG
AACTGGCTCCGCTGGTCACTGAATACATGCAGTTGAAATACGCCAAAGCCAGTGTGCTGGTGAACCTGCTGACCTCAGAA
AAAGGCCTGTTGTCTGAGCGCGGCTCCGCGGTCGTTGATGAGCGTACCAACACGCTGCTGATGAAAGACACCGCCAAAAA
CCTGGAGAAAGTCCGCGAAGCACTGATGATGCTGGACGTACCGGTGCGCCAGGTACTGATCGAAGCCCGTATCGTGGTCG
CCAGCACCAGTGTGGGTGAAGAGATGGGCGTTAAATGGGGCGGTGCTGGTTATAAAAACAACGGCAGCAACTGGACCACT
ATCGGCGGCAGCCAGCAGACGCTGACCGAAGGCAATCAGATTCTGTTCGATCGTGCATCAGGAAGTGCTGCTGGTTCTTC
CGCCATTGATATTGGTGCGGCCAATATGGTTGATTTCGGCGTAACCAATGCCTCTGCGTCGACTTTCGCCATTGGTTATC
AGACCGCTGATTACCTGCTGGATCTGGAATTAGCCGCCATTGAAACCGACGGCCGTGCTGAAATTGTGTCGCAGCCGCGG
GTGATTACCGCCGATGGCCAGACCGCTTCCATTGAATCGGGTACGGAAATTCCGTATCAGGAAGCCAGTTCCAGCGGTGC
CACCAGCGTGTCGTTCAAATCGGCCGTGCTGAAGCTGGAAGTAACCCCGCAAATCACCCCGGATGACCGCATCATCATGG
ATCTGGTCATCAACCAGGATTCCGTCGGTGAGCTGACCGCTGCCGGCCCCAGCATCAATACCAACTCGGTACAGACGCAG
GTACTGGTCGATAATGGCGAAACCGTGGTGCTGGGTGGTATTTTCCGTTCGGAAGAAATTGTTTCCATCAGCAAGACGCC
GTTCTTCGGTGATCTGCCACTGATCGGTGCATTGTTCCGTTACACCAACCGTGCTGATGACAAGAGCGAACTGCTGGTGT
TTATCACTCCACGACTGGTGAAGGACTCGCTCACGAACCGCTGA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(382-444)

AMIN domain (AMIN)

(44-123)

Secretin and TonB N terminus short domain (STN)

(308-354)

Bacterial type II and III secretion system protein (Secretin)

(546-701)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

48.732

100

0.489
  pilQ Acinetobacter baumannii D1279779

41.064

100

0.426
  pilQ Acinetobacter baumannii strain A118

40.928

100

0.424
  comQ Acinetobacter baylyi ADP1

39.861

100

0.406
  pilQ Legionella pneumophila strain Lp02

39.099

97.313

0.38
  pilQ Legionella pneumophila strain ERS1305867

38.953

97.313

0.379

Multiple sequence alignment