Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   GJQ55_RS11945 Genome accession   NZ_CP046056
Coordinates   2519573..2520646 (-) Length   357 a.a.
NCBI ID   WP_228346793.1    Uniprot ID   A0A9X7UYQ9
Organism   Venatoribacter cucullus strain ASxL5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2514573..2525646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJQ55_RS11920 (GJQ55_11850) aroK 2515192..2515707 (-) 516 WP_228345187.1 shikimate kinase AroK -
  GJQ55_RS11925 (GJQ55_11855) pilQ 2515711..2517834 (-) 2124 WP_228345188.1 type IV pilus secretin PilQ family protein Machinery gene
  GJQ55_RS11930 (GJQ55_11860) - 2517839..2518372 (-) 534 WP_228345189.1 pilus assembly protein PilP -
  GJQ55_RS11935 (GJQ55_11865) - 2518369..2519034 (-) 666 WP_228345190.1 type 4a pilus biogenesis protein PilO -
  GJQ55_RS11940 (GJQ55_11870) - 2519038..2519586 (-) 549 WP_228345191.1 PilN domain-containing protein -
  GJQ55_RS11945 (GJQ55_11875) pilM 2519573..2520646 (-) 1074 WP_228346793.1 pilus assembly protein PilM Machinery gene
  GJQ55_RS11950 (GJQ55_11880) - 2520812..2523292 (+) 2481 WP_228345192.1 penicillin-binding protein 1A -
  GJQ55_RS11955 (GJQ55_11885) - 2523483..2524886 (-) 1404 WP_228345193.1 FAD-binding oxidoreductase -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38951.91 Da        Isoelectric Point: 4.3653

>NTDB_id=400747 GJQ55_RS11945 WP_228346793.1 2519573..2520646(-) (pilM) [Venatoribacter cucullus strain ASxL5]
MANLFKKKSKALLGVDISSTSVKILELSHNNGRYQVEAYACESLPPNAIVEQSINNDEAVGEAIKRALTRSRAGARRAAI
AVAGSAVITKTVQMNGKLSDDEMDFQIRAEADQYIPYPLEEVALDWEVQGPSAGGNDMVDVLLAACRSETVERRKDAVEY
ANLEAGVVDVEAFCTERAFSLLQGQMDGDDIDTVAIIDVGATMTTLSILHEGKSIYTREQLFGGRQLTEDIMRRYGLSEE
EASRAKLEGGLPDDYETEVLEPFRRAVVQQVSRSLQFFYSSSQFNDVDYIILAGGTASIPHLADQVQDAMGIATIVANPF
VNMTLSQKVNPNLLNSDAPSLMIACGLAMRSFDNGKY

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=400747 GJQ55_RS11945 WP_228346793.1 2519573..2520646(-) (pilM) [Venatoribacter cucullus strain ASxL5]
CTGGCCAACCTGTTTAAGAAGAAGAGCAAGGCCTTGCTGGGGGTCGATATCAGTTCGACATCGGTTAAGATTCTTGAACT
GAGTCACAATAATGGAAGATATCAGGTTGAAGCCTATGCGTGCGAATCTCTGCCGCCTAATGCCATTGTTGAACAAAGCA
TTAATAATGACGAAGCCGTTGGTGAAGCGATCAAGCGTGCCTTGACCCGTTCCCGTGCCGGTGCCCGTCGTGCTGCCATT
GCGGTTGCCGGCTCTGCCGTTATTACCAAAACGGTGCAGATGAATGGCAAGCTCAGCGATGACGAGATGGATTTCCAGAT
CCGCGCTGAAGCGGATCAGTATATTCCTTATCCGCTGGAAGAAGTGGCGCTGGACTGGGAAGTACAGGGGCCGTCTGCCG
GTGGTAACGATATGGTAGATGTGCTGCTGGCGGCCTGCCGTTCTGAGACGGTTGAGCGGCGTAAAGATGCGGTCGAATAC
GCCAATCTTGAAGCCGGTGTTGTTGATGTCGAAGCGTTCTGTACGGAACGCGCCTTTTCTTTGCTGCAAGGCCAGATGGA
TGGCGACGATATCGATACCGTCGCCATTATTGATGTCGGCGCGACCATGACCACTCTCAGCATTCTGCATGAAGGCAAAT
CTATTTATACCCGCGAGCAGTTATTCGGCGGTCGTCAGCTGACCGAAGATATTATGCGCCGCTATGGTCTCAGCGAAGAG
GAGGCCAGCCGCGCCAAGCTCGAAGGGGGCTTGCCGGACGATTATGAAACGGAAGTGCTGGAGCCTTTCCGTCGTGCGGT
GGTGCAGCAGGTCAGTCGCTCGCTGCAGTTCTTTTATTCCTCCAGTCAGTTCAATGATGTGGATTACATCATTCTGGCGG
GCGGTACCGCTTCCATTCCCCATCTGGCCGATCAGGTTCAGGATGCCATGGGTATTGCTACCATTGTGGCCAATCCTTTC
GTCAATATGACGTTATCGCAGAAGGTAAACCCGAATCTGCTCAACAGTGACGCACCATCACTGATGATTGCCTGTGGTCT
GGCTATGAGGAGTTTTGATAATGGCAAATATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-352)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

54.108

98.88

0.535
  comM Acinetobacter nosocomialis M2

54.108

98.88

0.535
  comM Acinetobacter baylyi ADP1

49.008

98.88

0.485
  pilM Legionella pneumophila strain ERS1305867

44.633

99.16

0.443

Multiple sequence alignment