Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   SGGBAA2069_RS05695 Genome accession   NC_015215
Coordinates   1142026..1142868 (-) Length   280 a.a.
NCBI ID   WP_013643119.1    Uniprot ID   -
Organism   Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1137026..1147868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGGBAA2069_RS05675 (SGGBAA2069_c10790) - 1137759..1138193 (-) 435 WP_231844612.1 hypothetical protein -
  SGGBAA2069_RS05680 (SGGBAA2069_c10800) - 1138258..1138977 (-) 720 WP_009854200.1 DUF3307 domain-containing protein -
  SGGBAA2069_RS05685 (SGGBAA2069_c10810) - 1138977..1139642 (-) 666 WP_009854201.1 SatD family protein -
  SGGBAA2069_RS05690 (SGGBAA2069_c10820) topA 1139790..1141931 (-) 2142 WP_013643118.1 type I DNA topoisomerase -
  SGGBAA2069_RS05695 (SGGBAA2069_c10830) dprA 1142026..1142868 (-) 843 WP_013643119.1 DNA-processing protein DprA Machinery gene
  SGGBAA2069_RS05700 (SGGBAA2069_c10840) - 1142943..1143494 (-) 552 WP_009854204.1 sugar O-acetyltransferase -
  SGGBAA2069_RS05705 (SGGBAA2069_c10850) - 1143496..1144275 (-) 780 WP_009854205.1 ribonuclease HII -
  SGGBAA2069_RS05710 (SGGBAA2069_c10860) ylqF 1144262..1145116 (-) 855 WP_009854206.1 ribosome biogenesis GTPase YlqF -
  SGGBAA2069_RS05715 (SGGBAA2069_c10870) - 1145360..1145770 (+) 411 WP_009854207.1 DUF4231 domain-containing protein -
  SGGBAA2069_RS05720 (SGGBAA2069_c10880) - 1145980..1146297 (-) 318 WP_009854208.1 hypothetical protein -
  SGGBAA2069_RS05725 - 1146281..1146469 (-) 189 WP_014620148.1 hypothetical protein -
  SGGBAA2069_RS12150 - 1146474..1146623 (-) 150 WP_014294551.1 hypothetical protein -

Sequence

Protein


Download         Length: 280 a.a.        Molecular weight: 30898.93 Da        Isoelectric Point: 8.5553

>NTDB_id=40050 SGGBAA2069_RS05695 WP_013643119.1 1142026..1142868(-) (dprA) [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069]
MNNFELFKLKKAGLTNLNILAILDYQEKQEKSLSLRNMAVVSKCKNPILFMEKYKALDTKELRKEFNCFPSVSILDDEYP
LELKHCYNPPVLLFYQGNLELLNRPKMAVVGARTASATGTKSVQKIVKELGNHFVIVSGLARGIDTSAHLSALKNGGASI
AVIGCGLDVYYPKENKQLQAYMAKNHLVLSEYVAGEAPLKFHFPERNRIIAGLSQGVIVVEAKLRSGSLITCERGLEEGR
DVFAIPGNILDGKSDGCHHLIKEGAKCVTSGLDILSEYQI

Nucleotide


Download         Length: 843 bp        

>NTDB_id=40050 SGGBAA2069_RS05695 WP_013643119.1 1142026..1142868(-) (dprA) [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069]
ATGAATAATTTTGAATTGTTTAAATTAAAAAAAGCAGGATTAACAAATCTTAATATTTTAGCTATTTTAGATTATCAAGA
AAAGCAAGAGAAATCACTATCTTTGCGTAATATGGCAGTCGTCTCAAAATGTAAAAATCCTATCCTTTTTATGGAAAAAT
ACAAAGCACTGGACACAAAAGAATTGCGCAAAGAATTTAATTGTTTTCCTAGTGTTTCCATACTAGATGACGAATACCCA
TTAGAACTCAAACATTGTTATAATCCACCTGTTTTGCTGTTTTATCAAGGAAATTTAGAATTACTTAATCGCCCAAAAAT
GGCAGTAGTAGGAGCAAGAACAGCATCAGCAACAGGGACAAAATCCGTACAGAAAATTGTCAAAGAACTCGGGAATCATT
TTGTTATCGTTAGTGGGTTGGCGCGTGGCATTGATACCAGTGCGCATTTATCAGCTCTAAAAAACGGTGGTGCATCGATT
GCCGTTATCGGTTGCGGACTGGACGTTTATTATCCCAAAGAAAATAAGCAGTTGCAGGCGTACATGGCTAAAAATCACCT
CGTATTAAGTGAGTACGTAGCAGGAGAAGCACCGCTGAAATTCCATTTTCCAGAGCGAAATCGTATTATTGCAGGTTTAT
CACAAGGCGTTATCGTAGTAGAAGCTAAGCTGCGCTCAGGCAGTTTGATTACGTGCGAAAGAGGATTGGAAGAAGGACGA
GACGTTTTTGCCATTCCAGGAAATATTTTAGATGGAAAATCTGATGGCTGTCATCATTTGATAAAAGAGGGCGCAAAATG
CGTCACATCAGGCTTAGATATCCTTTCAGAATATCAAATATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-269)

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(1-62)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Streptococcus mutans UA159

74.101

99.286

0.736
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

63.929

100

0.639
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

63.929

100

0.639
  dprA/cilB/dalA Streptococcus pneumoniae D39

63.929

100

0.639
  dprA/cilB/dalA Streptococcus pneumoniae R6

63.929

100

0.639
  dprA/cilB/dalA Streptococcus mitis SK321

63.929

100

0.639
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

63.929

100

0.639
  dprA Lactococcus lactis subsp. cremoris KW2

61.871

99.286

0.614
  dprA Haemophilus influenzae Rd KW20

38.258

94.286

0.361
  dprA Legionella pneumophila strain ERS1305867

41.909

86.071

0.361

Multiple sequence alignment