Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACMV_RS11375 Genome accession   NC_015186
Coordinates   2518528..2519016 (-) Length   162 a.a.
NCBI ID   WP_013640502.1    Uniprot ID   F0J0U4
Organism   Acidiphilium multivorum AIU301     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2513528..2524016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMV_RS11365 (ACMV_22810) - 2514107..2515504 (+) 1398 WP_007424570.1 sigma-54 dependent transcriptional regulator -
  ACMV_RS11370 (ACMV_22820) - 2515696..2518107 (+) 2412 WP_231844396.1 TonB-dependent receptor -
  ACMV_RS11375 (ACMV_22830) ssb 2518528..2519016 (-) 489 WP_013640502.1 single-stranded DNA-binding protein Machinery gene
  ACMV_RS11380 (ACMV_22840) cydB 2519142..2520167 (-) 1026 WP_013640503.1 cytochrome d ubiquinol oxidase subunit II -
  ACMV_RS11385 (ACMV_22850) - 2520173..2521591 (-) 1419 WP_013640504.1 cytochrome ubiquinol oxidase subunit I -
  ACMV_RS11390 (ACMV_22860) - 2521588..2522229 (-) 642 WP_013640505.1 GbsR/MarR family transcriptional regulator -
  ACMV_RS11395 (ACMV_22870) - 2522296..2523207 (-) 912 WP_013640506.1 bestrophin family protein -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17458.68 Da        Isoelectric Point: 7.0234

>NTDB_id=39999 ACMV_RS11375 WP_013640502.1 2518528..2519016(-) (ssb) [Acidiphilium multivorum AIU301]
MAGSVNKVILVGNLGRDPEMRTTQSGMKIVNLAVATSETWNDKMSGERQERTEWHRVVIMNDRLADVAERFLKKGSKIYL
EGKLQTRKWTDQSGQEKYTTEIMLGRIGAELVLLDRAGAGAGGDDMPRPASRPSGGGGGAPRAGGWDAGRAGGGELDDEI
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=39999 ACMV_RS11375 WP_013640502.1 2518528..2519016(-) (ssb) [Acidiphilium multivorum AIU301]
ATGGCGGGTAGTGTGAACAAGGTGATCCTGGTTGGAAATCTCGGGCGGGATCCTGAAATGCGGACGACCCAGTCCGGCAT
GAAGATCGTCAATCTCGCGGTCGCGACCTCGGAAACCTGGAACGACAAGATGAGCGGCGAGCGGCAGGAGCGCACCGAGT
GGCACCGCGTCGTCATCATGAACGACCGGCTGGCCGACGTGGCGGAGCGCTTCCTGAAGAAGGGCTCGAAGATCTATCTC
GAGGGCAAGTTGCAGACCCGCAAATGGACCGACCAGTCGGGCCAGGAGAAATACACCACCGAAATCATGTTGGGCCGGAT
CGGCGCCGAGCTGGTGCTGCTCGACCGTGCTGGCGCCGGGGCGGGCGGTGACGACATGCCGCGCCCGGCATCGCGGCCCT
CCGGTGGCGGCGGCGGTGCGCCGCGTGCCGGCGGATGGGATGCCGGGCGGGCCGGCGGCGGCGAACTCGACGACGAAATT
CCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F0J0U4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.98

93.21

0.494
  ssb Vibrio cholerae strain A1552

44.509

100

0.475
  ssb Neisseria gonorrhoeae MS11

38.889

100

0.432
  ssb Neisseria meningitidis MC58

37.43

100

0.414

Multiple sequence alignment