Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   GJE18_RS05755 Genome accession   NZ_CP045927
Coordinates   1159929..1160240 (-) Length   103 a.a.
NCBI ID   WP_165886175.1    Uniprot ID   -
Organism   Staphylococcus agnetis strain 1379     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1154929..1165240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJE18_RS05725 (GJE18_05710) gcvPA 1155541..1156890 (-) 1350 WP_060551122.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  GJE18_RS05730 (GJE18_05715) gcvT 1156902..1157993 (-) 1092 WP_107396908.1 glycine cleavage system aminomethyltransferase GcvT -
  GJE18_RS05735 (GJE18_05720) - 1158145..1158714 (-) 570 WP_107368917.1 shikimate kinase -
  GJE18_RS05740 - 1158653..1158850 (-) 198 WP_037567695.1 hypothetical protein -
  GJE18_RS05745 (GJE18_05725) - 1158834..1159316 (-) 483 WP_107368914.1 competence type IV pilus minor pilin ComGF -
  GJE18_RS05750 (GJE18_05730) comGD 1159508..1159939 (-) 432 WP_225906114.1 competence type IV pilus minor pilin ComGD -
  GJE18_RS05755 (GJE18_05735) comGC 1159929..1160240 (-) 312 WP_165886175.1 competence type IV pilus major pilin ComGC Machinery gene
  GJE18_RS05760 (GJE18_05740) comGB 1160261..1161328 (-) 1068 WP_107368913.1 competence type IV pilus assembly protein ComGB -
  GJE18_RS05765 (GJE18_05745) comGA 1161297..1162271 (-) 975 WP_060551125.1 competence type IV pilus ATPase ComGA Machinery gene
  GJE18_RS05770 (GJE18_05750) - 1162328..1162951 (-) 624 WP_107368912.1 MBL fold metallo-hydrolase -
  GJE18_RS05775 (GJE18_05755) - 1162966..1163277 (-) 312 WP_060551127.1 MTH1187 family thiamine-binding protein -
  GJE18_RS05780 (GJE18_05760) - 1163278..1164264 (-) 987 WP_060551128.1 ROK family glucokinase -
  GJE18_RS05785 (GJE18_05765) - 1164261..1164464 (-) 204 WP_037567684.1 YqgQ family protein -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 11522.72 Da        Isoelectric Point: 9.0689

>NTDB_id=399305 GJE18_RS05755 WP_165886175.1 1159929..1160240(-) (comGC) [Staphylococcus agnetis strain 1379]
MIHMLKNKKGFTLIEMLLVLLIISVLLILIIPNIAKQSEHIQKTGCVAQLKLVDSQIEAYTLKYNRKPATIEELVQEGYI
KENQKNCKSGESITIRGGEAIAS

Nucleotide


Download         Length: 312 bp        

>NTDB_id=399305 GJE18_RS05755 WP_165886175.1 1159929..1160240(-) (comGC) [Staphylococcus agnetis strain 1379]
ATGATTCACATGCTAAAAAATAAAAAAGGATTCACGCTAATTGAAATGTTGCTTGTATTACTGATTATTAGCGTTTTATT
AATTTTAATTATCCCAAACATAGCTAAACAATCTGAACACATTCAAAAAACAGGATGTGTTGCACAACTTAAACTTGTTG
ACAGTCAAATAGAAGCATATACATTAAAATACAATCGTAAACCAGCAACTATAGAAGAACTTGTTCAAGAAGGTTATATT
AAGGAGAATCAAAAGAATTGTAAAAGTGGTGAAAGCATCACAATCCGTGGTGGCGAGGCTATTGCATCGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(6-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

68.932

100

0.689
  comGC Staphylococcus aureus N315

68.932

100

0.689
  comGC Bacillus subtilis subsp. subtilis str. 168

44.086

90.291

0.398
  comYC Streptococcus suis isolate S10

51.316

73.786

0.379
  comYC Streptococcus gordonii str. Challis substr. CH1

49.367

76.699

0.379
  comGC/cglC Streptococcus mitis SK321

50

73.786

0.369
  comGC/cglC Streptococcus mitis NCTC 12261

50

73.786

0.369
  comYC Streptococcus mutans UA140

48.101

76.699

0.369
  comYC Streptococcus mutans UA159

48.101

76.699

0.369

Multiple sequence alignment