Detailed information NTG0398965

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: GHV42_RS05570
• Genome accession: NZ_CP045912
• Coordinates: 1215259..1216518 (-)
• Length: 419 a.a.
• NCBI ID: WP_014504324.1
• Uniprot ID: G7TE90
• Organism: Xanthomonas oryzae pv. oryzicola strain 0-9
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1210259..1221518

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GHV42_RS05560 (GHV42_05560)	coaE	1213767..1214375 (-)	609	WP_014504326.1	dephospho-CoA kinase	-
GHV42_RS05565 (GHV42_05565)	-	1214389..1215252 (-)	864	WP_047340103.1	A24 family peptidase	-
GHV42_RS05570 (GHV42_05570)	pilC	1215259..1216518 (-)	1260	WP_014504324.1	type II secretion system F family protein	Machinery gene
GHV42_RS05575 (GHV42_05575)	-	1216873..1217298 (+)	426	WP_014504323.1	pilin	-
GHV42_RS05580 (GHV42_05580)	-	1217434..1219023 (+)	1590	WP_014504322.1	phosphoethanolamine transferase	-
GHV42_RS05585 (GHV42_05585)	-	1219034..1219663 (+)	630	WP_024711608.1	hypothetical protein	-
GHV42_RS05590 (GHV42_05590)	-	1219633..1221159 (+)	1527	WP_047340101.1	membrane protein	-

Sequence

Protein

• Length: 419 a.a.
• Molecular weight: 46112.66 Da
• Isoelectric Point: 10.2301

>NTDB_id=398965 GHV42_RS05570 WP_014504324.1 1215259..1216518(-) (pilC) [Xanthomonas oryzae pv. oryzicola strain 0-9]
MSVARSAIKKQPVDRNTSMLQTFMWEGADKRGVKMKGEQTARNANMLRAELRRQGIVPSMVKQKPKPLFGAAGKKITPKE
IAFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRMKKMVGQIRTDIEGGSSLYESISKHPVQFDELYRNLVRAGEGAGVLE
TVLETVATYKENIEALKGKIKKAMFYPAMVVAVAIIVSAILLIFVVPQFEEVFKSFGAELPAFTQLLVNASRFMVSYWWL
MLMVTVGSVVGFIFAYKRSPRMQHGLDRLILKVPVIGQIMHNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKLYEE
AVFRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEDEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLGAVVG

Nucleotide

• Length: 1260 bp

>NTDB_id=398965 GHV42_RS05570 WP_014504324.1 1215259..1216518(-) (pilC) [Xanthomonas oryzae pv. oryzicola strain 0-9]
ATGTCAGTCGCGCGTAGCGCCATCAAGAAGCAACCGGTCGACCGAAACACCAGCATGCTGCAGACCTTCATGTGGGAAGG
GGCTGACAAGCGTGGCGTGAAGATGAAGGGAGAGCAGACAGCCCGCAACGCCAATATGTTGCGAGCAGAGCTGCGCCGTC
AGGGTATCGTGCCCAGCATGGTGAAGCAAAAGCCGAAGCCTCTGTTCGGAGCGGCGGGGAAGAAAATTACCCCTAAAGAA
ATTGCGTTCTTTAGCCGCCAGATGGCGACGATGATGAAGTCGGGCGTGCCCATCGTCAGTTCGTTGGAGATCATTGGCGA
GGGACACAAGAACCCACGCATGAAAAAAATGGTCGGCCAGATCAGGACAGATATCGAGGGTGGATCCTCGCTCTACGAGT
CCATCAGCAAACATCCCGTTCAGTTTGACGAGCTCTATCGCAACCTCGTCCGCGCGGGCGAAGGCGCTGGCGTACTGGAG
ACAGTCCTCGAAACGGTCGCTACCTACAAAGAAAACATTGAAGCCCTGAAGGGCAAGATCAAAAAGGCAATGTTCTACCC
TGCCATGGTGGTTGCGGTGGCAATCATCGTGAGTGCGATTTTGCTCATCTTCGTGGTGCCTCAGTTCGAGGAAGTATTCA
AGAGCTTCGGTGCCGAACTACCGGCATTCACTCAGCTCCTCGTCAACGCATCGCGCTTCATGGTCAGCTATTGGTGGTTG
ATGCTGATGGTGACAGTTGGATCTGTCGTTGGCTTCATCTTTGCCTACAAACGTTCTCCACGGATGCAGCATGGACTTGA
TCGATTGATCCTCAAGGTGCCCGTAATCGGGCAGATCATGCACAACAGTGCGATTGCACGCTTTGCACGGACCACTGCAG
TGACATTCAAGGCAGGCGTTCCTCTAGTTGAGGCACTTGGGATCGTAGCTGGCGCTACTGGCAATAAGCTTTATGAAGAG
GCTGTTTTCAGGATGCGGGACGATGTGTCTGTGGGTTACCCGGTCAACATGGCGATGAAACAGGTAAACCTATTTCCACA
CATGGTTATTCAAATGACTGCGATTGGCGAAGAAGCCGGCGCACTTGATGCAATGCTCTTCAAAGTGGCTGAATACTTTG
AGGATGAGGTCAATAATGCCGTGGATGCACTCAGCAGCCTGCTCGAGCCACTGATCATGGTCTTCATCGGCACGATCGTC
GGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTGGGTTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (84-207)

• Type II secretion system (T2SS), protein F (T2SSF) (288-410)

3D structure

• AlphaFold DB: G7TE90

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Legionella pneumophila strain ERS1305867	52.709	96.897	0.511
pilC	Pseudomonas stutzeri DSM 10701	53.788	94.511	0.508
pilC	Acinetobacter baylyi ADP1	50.617	96.659	0.489
pilC	Acinetobacter baumannii D1279779	50.37	96.659	0.487
pilG	Neisseria gonorrhoeae MS11	43.108	95.227	0.411
pilG	Neisseria meningitidis 44/76-A	42.5	95.465	0.406
pilC	Vibrio cholerae strain A1552	40.25	95.465	0.384
pilC	Vibrio campbellii strain DS40M4	38.75	95.465	0.37