Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | APZ19_RS12300 | Genome accession | NZ_CP045859 |
| Coordinates | 2621258..2621557 (-) | Length | 99 a.a. |
| NCBI ID | WP_020196004.1 | Uniprot ID | A0A0C1VUB7 |
| Organism | Vibrio owensii strain SH14 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2616258..2626557
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| APZ19_RS12275 (APZ19_12275) | - | 2616722..2617936 (+) | 1215 | WP_005437583.1 | pyridoxal phosphate-dependent aminotransferase | - |
| APZ19_RS12280 (APZ19_12280) | yfbR | 2618020..2618604 (+) | 585 | WP_009707166.1 | 5'-deoxynucleotidase | - |
| APZ19_RS12285 (APZ19_12285) | - | 2618608..2619942 (+) | 1335 | WP_194842423.1 | anti-phage deoxyguanosine triphosphatase | - |
| APZ19_RS12290 (APZ19_12290) | - | 2619963..2620580 (-) | 618 | WP_054822889.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| APZ19_RS12295 (APZ19_12295) | rrtA | 2620584..2621135 (+) | 552 | WP_054822890.1 | rhombosortase | - |
| APZ19_RS12300 (APZ19_12300) | comEA | 2621258..2621557 (-) | 300 | WP_020196004.1 | ComEA family DNA-binding protein | Machinery gene |
| APZ19_RS12305 (APZ19_12305) | ppiD | 2621705..2623564 (-) | 1860 | WP_054822891.1 | peptidylprolyl isomerase | - |
| APZ19_RS12310 (APZ19_12310) | - | 2623779..2624051 (-) | 273 | WP_005430934.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 99 a.a. Molecular weight: 10819.59 Da Isoelectric Point: 7.9988
>NTDB_id=398763 APZ19_RS12300 WP_020196004.1 2621258..2621557(-) (comEA) [Vibrio owensii strain SH14]
MKWMLTLCLLLLAPMSWAEEGKSVTTKAAKYEGIEITVNVNTASAEEIATLLNGIGTKKAQDIVEYRNEHGPFKTAADLS
KVKGIGEATVKKNQDRILL
MKWMLTLCLLLLAPMSWAEEGKSVTTKAAKYEGIEITVNVNTASAEEIATLLNGIGTKKAQDIVEYRNEHGPFKTAADLS
KVKGIGEATVKKNQDRILL
Nucleotide
Download Length: 300 bp
>NTDB_id=398763 APZ19_RS12300 WP_020196004.1 2621258..2621557(-) (comEA) [Vibrio owensii strain SH14]
ATGAAATGGATGTTAACACTGTGCTTGCTGCTATTGGCGCCAATGAGTTGGGCGGAAGAAGGCAAGTCGGTAACGACAAA
AGCGGCCAAGTATGAAGGCATTGAAATCACCGTTAATGTGAATACGGCTTCCGCGGAAGAAATTGCGACACTACTGAATG
GTATTGGGACAAAAAAAGCGCAAGACATTGTTGAGTACCGAAATGAACATGGCCCATTTAAAACCGCAGCGGACTTAAGC
AAAGTGAAAGGCATTGGTGAAGCGACGGTGAAAAAGAACCAAGATCGTATCTTACTTTGA
ATGAAATGGATGTTAACACTGTGCTTGCTGCTATTGGCGCCAATGAGTTGGGCGGAAGAAGGCAAGTCGGTAACGACAAA
AGCGGCCAAGTATGAAGGCATTGAAATCACCGTTAATGTGAATACGGCTTCCGCGGAAGAAATTGCGACACTACTGAATG
GTATTGGGACAAAAAAAGCGCAAGACATTGTTGAGTACCGAAATGAACATGGCCCATTTAAAACCGCAGCGGACTTAAGC
AAAGTGAAAGGCATTGGTGAAGCGACGGTGAAAAAGAACCAAGATCGTATCTTACTTTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio campbellii strain DS40M4 |
83.838 |
100 |
0.838 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
74.747 |
100 |
0.747 |
| comEA | Vibrio cholerae C6706 |
59 |
100 |
0.596 |
| comEA | Vibrio cholerae strain A1552 |
59 |
100 |
0.596 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
43.75 |
100 |
0.495 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
39.252 |
100 |
0.424 |
| comEA | Acinetobacter baumannii strain A118 |
30.894 |
100 |
0.384 |