Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   GII77_RS12930 Genome accession   NZ_CP045825
Coordinates   2507266..2507601 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain 75     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2502266..2512601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII77_RS12910 (GII77_12910) gcvT 2502858..2503946 (-) 1089 WP_015251720.1 glycine cleavage system aminomethyltransferase GcvT -
  GII77_RS12915 (GII77_12915) hepAA 2504388..2506061 (+) 1674 WP_004398544.1 SNF2-related protein -
  GII77_RS12920 (GII77_12920) yqhG 2506082..2506876 (+) 795 WP_003230200.1 YqhG family protein -
  GII77_RS12925 (GII77_12925) sinI 2507059..2507232 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  GII77_RS12930 (GII77_12930) sinR 2507266..2507601 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  GII77_RS12935 (GII77_12935) tasA 2507694..2508479 (-) 786 WP_015251717.1 biofilm matrix protein TasA -
  GII77_RS12940 (GII77_12940) sipW 2508543..2509115 (-) 573 WP_003246088.1 signal peptidase I SipW -
  GII77_RS12945 (GII77_12945) tapA 2509099..2509860 (-) 762 WP_015251716.1 amyloid fiber anchoring/assembly protein TapA -
  GII77_RS12950 (GII77_12950) yqzG 2510132..2510458 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  GII77_RS12955 (GII77_12955) spoIITA 2510500..2510679 (-) 180 WP_029726723.1 YqzE family protein -
  GII77_RS12960 (GII77_12960) comGG 2510750..2511124 (-) 375 WP_015251714.1 ComG operon protein ComGG Machinery gene
  GII77_RS12965 (GII77_12965) comGF 2511125..2511508 (-) 384 WP_015251713.1 ComG operon protein ComGF Machinery gene
  GII77_RS12970 (GII77_12970) comGE 2511534..2511881 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  GII77_RS12975 (GII77_12975) comGD 2511865..2512296 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  GII77_RS12980 (GII77_12980) comGC 2512286..2512582 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=398304 GII77_RS12930 WP_003226345.1 2507266..2507601(+) (sinR) [Bacillus subtilis strain 75]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=398304 GII77_RS12930 WP_003226345.1 2507266..2507601(+) (sinR) [Bacillus subtilis strain 75]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment