Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   TTJL18_RS10220 Genome accession   NC_017587
Coordinates   1898508..1899317 (-) Length   269 a.a.
NCBI ID   WP_014630406.1    Uniprot ID   -
Organism   Thermus thermophilus JL-18     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1893508..1904317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TTJL18_RS10190 (TtJL18_2049) rsmI 1893670..1894464 (-) 795 WP_014630402.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  TTJL18_RS10195 (TtJL18_2050) - 1894466..1894960 (-) 495 WP_014630403.1 hypothetical protein -
  TTJL18_RS10200 (TtJL18_2051) - 1895023..1895550 (-) 528 WP_011173971.1 inorganic diphosphatase -
  TTJL18_RS10205 (TtJL18_2052) - 1895583..1896209 (+) 627 WP_014630404.1 YcxB family protein -
  TTJL18_RS10210 (TtJL18_2053) comEA 1896182..1896490 (+) 309 WP_041444468.1 helix-hairpin-helix domain-containing protein Machinery gene
  TTJL18_RS10215 (TtJL18_2054) comA/comEC 1896487..1898520 (+) 2034 WP_041444469.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  TTJL18_RS10220 (TtJL18_2055) spo0J 1898508..1899317 (-) 810 WP_014630406.1 ParB/RepB/Spo0J family partition protein Regulator
  TTJL18_RS10225 (TtJL18_2056) soj 1899301..1900050 (-) 750 WP_011173976.1 chromosome-partitioning ATPase Soj -
  TTJL18_RS10230 (TtJL18_2057) rsmG 1900044..1900793 (-) 750 WP_014630407.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  TTJL18_RS10235 (TtJL18_2058) mnmG 1900793..1902586 (-) 1794 WP_014630408.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29762.66 Da        Isoelectric Point: 10.1072

>NTDB_id=39763 TTJL18_RS10220 WP_014630406.1 1898508..1899317(-) (spo0J) [Thermus thermophilus JL-18]
MSKKPSGLGRGLEALLPKTGAGVVRLPLASIRPNPRQPRKRFAEESLKELADSIREKGLLQPLLVRPQGDGYELVAGERR
YRAALMAGLQEVPAVVKDLTDREALELALVENLQREDLSPVEEARGYQALLEMGLTQEEVARRVGKARSTVANALRLLQL
PPEALEALERGEITAGHARALLMLEPEDRLWGLKEILEKGLSVRQAEALRERLAMTPKRPAEPSPLSLELSRHLGLPVRV
VGGKKGKVVIQYRSLEELEALLRRLGYQA

Nucleotide


Download         Length: 810 bp        

>NTDB_id=39763 TTJL18_RS10220 WP_014630406.1 1898508..1899317(-) (spo0J) [Thermus thermophilus JL-18]
GTGTCCAAGAAGCCTAGTGGCCTAGGAAGGGGCCTCGAGGCCCTGCTCCCCAAGACGGGGGCGGGGGTGGTCCGCCTGCC
CCTCGCCAGCATCCGCCCCAACCCCCGCCAGCCGCGGAAGCGGTTCGCCGAGGAGAGCCTCAAGGAGCTCGCCGACTCCA
TCCGGGAGAAGGGCCTCCTCCAGCCCCTCCTCGTCCGGCCCCAGGGGGACGGGTACGAGCTCGTGGCGGGGGAAAGGCGC
TACCGGGCCGCCCTCATGGCGGGGCTTCAGGAGGTCCCCGCCGTGGTCAAGGACCTCACGGACCGGGAGGCCTTGGAGCT
CGCCCTGGTGGAGAACCTCCAGCGGGAGGACCTCTCCCCCGTGGAGGAGGCCCGGGGCTACCAGGCCCTTTTGGAGATGG
GCCTCACCCAGGAGGAGGTGGCCCGGCGGGTGGGCAAGGCCCGCTCCACCGTGGCCAACGCCCTCAGGCTTCTCCAGCTT
CCCCCCGAGGCCCTCGAGGCCCTGGAGCGGGGGGAGATCACCGCGGGCCACGCCCGGGCCCTCCTCATGCTGGAGCCCGA
GGACCGGCTCTGGGGGCTTAAGGAGATCCTGGAGAAGGGGCTTTCCGTGCGGCAGGCGGAGGCCCTTAGGGAGCGCCTGG
CCATGACCCCTAAGCGCCCCGCCGAGCCCTCCCCCCTCTCCCTGGAGCTCTCCCGCCACCTGGGCCTGCCCGTGAGGGTG
GTGGGGGGGAAGAAGGGCAAGGTGGTGATCCAGTACCGCTCCTTGGAGGAGCTGGAGGCCCTTCTGCGGCGCCTCGGCTA
CCAGGCGTAG

Domains

Predicted by InterProScan.

HTH domain found in ParB protein (HTH_ParB)

(162-210)

ParB/Sulfiredoxin domain (ParB_N)

(26-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

42.292

94.052

0.398

Multiple sequence alignment