Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   GII90_RS16045 Genome accession   NZ_CP045811
Coordinates   3100349..3100993 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain P9_B1     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3095349..3105993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII90_RS16010 (GII90_16010) mrpB 3096541..3096972 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  GII90_RS16015 (GII90_16015) mrpC 3096972..3097313 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  GII90_RS16020 (GII90_16020) mrpD 3097306..3098787 (+) 1482 WP_003244432.1 Na+/H+ antiporter subunit D -
  GII90_RS16025 (GII90_16025) mrpE 3098793..3099269 (+) 477 WP_003244015.1 Na+/H+ antiporter subunit E -
  GII90_RS16030 (GII90_16030) mrpF 3099269..3099553 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  GII90_RS16035 (GII90_16035) mnhG 3099537..3099911 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  GII90_RS16040 (GII90_16040) yuxO 3099950..3100330 (-) 381 WP_003228810.1 hotdog fold thioesterase -
  GII90_RS16045 (GII90_16045) comA 3100349..3100993 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  GII90_RS16050 (GII90_16050) comP 3101074..3103383 (-) 2310 WP_153940278.1 two-component system sensor histidine kinase ComP Regulator
  GII90_RS16055 (GII90_16055) comX 3103398..3103565 (-) 168 WP_003242801.1 competence pheromone ComX Regulator
  GII90_RS16060 (GII90_16060) comQ 3103553..3104452 (-) 900 WP_003243039.1 ComX modifying isoprenyl transferase ComQ Regulator
  GII90_RS16065 (GII90_16065) degQ 3104637..3104777 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  GII90_RS16070 (GII90_16070) - 3104999..3105124 (+) 126 WP_003228793.1 hypothetical protein -
  GII90_RS16075 (GII90_16075) - 3105238..3105606 (+) 369 WP_003243784.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=397444 GII90_RS16045 WP_003220716.1 3100349..3100993(-) (comA) [Bacillus subtilis strain P9_B1]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=397444 GII90_RS16045 WP_003220716.1 3100349..3100993(-) (comA) [Bacillus subtilis strain P9_B1]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment