Detailed information NTG0396836

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: HQN50_RS28900
• Genome accession: NZ_CP053922
• Coordinates: 6184448..6185941 (+)
• Length: 497 a.a.
• NCBI ID: WP_023088684.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain YD001
• Function: DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 6179448..6190941

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HQN50_RS28870	-	6179582..6180496 (-)	915	WP_003098236.1	fimbrial protein	-
HQN50_RS28875	sutA	6180920..6181237 (-)	318	WP_003098240.1	transcriptional regulator SutA	-
HQN50_RS28880	-	6181315..6181740 (-)	426	WP_003096441.1	secondary thiamine-phosphate synthase enzyme YjbQ	-
HQN50_RS28885	-	6182001..6183329 (-)	1329	WP_003098243.1	ammonium transporter	-
HQN50_RS28890	glnK	6183369..6183707 (-)	339	WP_003096476.1	P-II family nitrogen regulator	-
HQN50_RS28895	-	6184147..6184407 (+)	261	WP_003096478.1	accessory factor UbiK family protein	-
HQN50_RS28900	comM	6184448..6185941 (+)	1494	WP_023088684.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
HQN50_RS28905	betT	6186066..6188051 (+)	1986	WP_003096496.1	choline BCCT transporter BetT	-
HQN50_RS28910	pchP	6188094..6189143 (-)	1050	WP_023088685.1	phosphorylcholine phosphatase	-
HQN50_RS28915	-	6189294..6190211 (-)	918	WP_023088686.1	LysR substrate-binding domain-containing protein	-

Sequence

Protein

• Length: 497 a.a.
• Molecular weight: 53052.95 Da
• Isoelectric Point: 7.9587

>NTDB_id=396836 HQN50_RS28900 WP_023088684.1 6184448..6185941(+) (comM) [Pseudomonas aeruginosa strain YD001]
MSLAIVHSRAQVGVEAPCVSVEAHLANGLPSLTLVGLPETAVRESKDRVRSALLNAGFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASGQLPGTALDGLECLGELALSGAIRPVRGVLPAALAARDARRVLVVPKENAEEASLASGLTVFAVDHL
LEIAGHLSGQAPLPPYQARGLLRAPFPYPDLAEVQGQAAAKRALLVAAAGAHNLLLSGPPGTGKTLLASRLPGLLPALDE
DEALEVAAIHSVASHVPLRHWPQRPFRQPHHSASAPALVGGGSRPQPGEITLAHQGVLFLDELPEFERKVLEVLREPLES
GEIVIARANGRVRFPARFQLVAAMNPCPCGYLGDPSGRCRCTPEQVQRYRGKLSGPLLDRIDLHVSVLRESTSLQPGHGE
TATAEVSERVGAARQRQLARQGCANAHLDLQAMHRNCALAEADRRWLEAAGERLELSLRALHRILKVARTLADLERIDAI
ERRHLAEALQYRATTST

Nucleotide

• Length: 1494 bp

>NTDB_id=396836 HQN50_RS28900 WP_023088684.1 6184448..6185941(+) (comM) [Pseudomonas aeruginosa strain YD001]
ATGTCCCTGGCGATTGTCCACAGCCGAGCCCAGGTCGGCGTCGAAGCCCCCTGCGTCAGCGTCGAGGCGCACCTGGCCAA
CGGCCTGCCTTCGCTGACCCTGGTCGGCCTGCCGGAAACCGCGGTGCGCGAGAGCAAGGACCGCGTGCGCAGCGCCCTGC
TCAATGCCGGTTTCGACTTCCCCGCGCGGCGCATCACCCTCAACCTCGCCCCCGCCGACCTACCCAAGGACGGCGGTCGC
TTCGACCTGGCCATCGCACTCGGCATCCTCGCCGCCAGCGGCCAGTTGCCCGGCACCGCCCTCGACGGCCTGGAGTGCCT
CGGCGAACTGGCCCTGTCCGGGGCGATCCGCCCAGTGCGAGGCGTATTGCCGGCCGCGCTGGCGGCGCGCGACGCAAGGC
GCGTTCTGGTGGTACCGAAGGAAAATGCCGAAGAGGCCAGCCTGGCCAGCGGGCTGACGGTGTTCGCCGTGGACCACCTG
CTGGAGATCGCCGGACACCTCTCCGGCCAGGCCCCGCTGCCGCCCTACCAGGCCCGCGGCCTGCTCCGCGCGCCCTTCCC
TTATCCAGACCTGGCCGAGGTCCAGGGCCAGGCCGCCGCCAAGCGCGCCCTGCTGGTGGCCGCCGCCGGCGCGCACAACC
TGTTGCTCAGCGGCCCGCCGGGCACCGGCAAGACCCTCCTGGCCAGCCGCCTGCCCGGCCTGCTGCCGGCGCTCGACGAG
GACGAAGCCCTGGAGGTCGCGGCGATCCATTCGGTGGCCAGCCACGTCCCCCTCAGGCACTGGCCGCAGCGACCGTTCCG
CCAGCCGCACCACTCCGCCTCCGCGCCGGCCCTGGTCGGCGGCGGCAGCCGCCCGCAGCCGGGCGAGATCACCCTGGCGC
ACCAGGGCGTGCTGTTCCTCGACGAACTGCCGGAGTTCGAGCGCAAGGTCCTGGAGGTCCTGCGCGAGCCGCTGGAAAGC
GGCGAGATCGTCATTGCCCGGGCCAACGGCCGGGTACGTTTCCCGGCGCGCTTCCAACTGGTGGCGGCGATGAATCCCTG
TCCCTGTGGCTACCTCGGCGATCCCAGTGGCCGCTGCCGCTGCACCCCGGAACAGGTCCAGCGCTACCGGGGCAAGCTGT
CCGGACCGCTGCTCGATCGCATCGACCTGCACGTCAGCGTGCTCCGCGAAAGCACCAGCCTGCAGCCAGGACACGGCGAA
ACCGCTACCGCCGAGGTCAGCGAACGGGTGGGCGCCGCACGGCAACGGCAACTGGCCCGCCAGGGCTGCGCCAATGCCCA
TCTCGATCTCCAGGCGATGCACCGCAATTGTGCACTCGCCGAAGCGGACCGCCGCTGGCTGGAGGCTGCCGGAGAGCGCC
TGGAACTTTCCTTGCGCGCCTTGCATCGCATACTCAAGGTGGCCCGGACGCTGGCCGACCTGGAGCGCATCGATGCCATC
GAACGCCGGCACCTGGCGGAAGCCCTGCAGTATCGGGCAACGACCTCCACGTGA

Domains

Predicted by InterProScan.

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (190-390)

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (402-492)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Vibrio campbellii strain DS40M4	56.653	99.799	0.565
comM	Haemophilus influenzae Rd KW20	55.206	100	0.565
comM	Vibrio cholerae O1 biovar El Tor strain E7946	56.25	99.799	0.561
comM	Vibrio cholerae strain A1552	56.25	99.799	0.561
comM	Glaesserella parasuis strain SC1401	55.09	100	0.555
comM	Acinetobacter baylyi ADP1	53.614	100	0.537
comM	Legionella pneumophila str. Paris	50.1	100	0.503
comM	Legionella pneumophila strain ERS1305867	50.1	100	0.503
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	45.957	100	0.469
comM	Helicobacter pylori 26695	38.845	100	0.392