Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   HQN50_RS17505 Genome accession   NZ_CP053922
Coordinates   3758069..3758710 (-) Length   213 a.a.
NCBI ID   WP_003098129.1    Uniprot ID   A0A0H2Z9P5
Organism   Pseudomonas aeruginosa strain YD001     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3753069..3763710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQN50_RS17490 hupB 3753748..3754020 (-) 273 WP_003087931.1 nucleoid-associated protein HU-beta -
  HQN50_RS17495 lon 3754156..3756552 (-) 2397 WP_003087926.1 endopeptidase La -
  HQN50_RS17500 clpX 3756684..3757964 (-) 1281 WP_003087924.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  HQN50_RS17505 clpP 3758069..3758710 (-) 642 WP_003098129.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  HQN50_RS17510 tig 3758804..3760114 (-) 1311 WP_003087920.1 trigger factor -
  HQN50_RS17515 parR 3760346..3761053 (+) 708 WP_023088381.1 response regulator transcription factor ParR -
  HQN50_RS17520 parS 3761054..3762340 (+) 1287 WP_003087912.1 sensor histidine kinase ParS -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23502.14 Da        Isoelectric Point: 6.3772

>NTDB_id=396793 HQN50_RS17505 WP_003098129.1 3758069..3758710(-) (clpP) [Pseudomonas aeruginosa strain YD001]
MSRNSFIPHVPDIQAAGGLVPMVVEQSARGERAYDIYSRLLKERIIFLVGQVEDYMANLVVAQLLFLEAENPEKDIHLYI
NSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGALLLAGGAAGKRYCLPHSRMMIHQPLGGFQGQASDIEIHAKEIL
FIKERLNQILAHHTGQPLDVIARDTDRDRFMSGDEAVKYGLIDKVMTQRDLAV

Nucleotide


Download         Length: 642 bp        

>NTDB_id=396793 HQN50_RS17505 WP_003098129.1 3758069..3758710(-) (clpP) [Pseudomonas aeruginosa strain YD001]
ATGTCTCGCAACTCTTTTATTCCGCACGTTCCCGATATCCAGGCCGCCGGTGGCCTGGTGCCCATGGTGGTGGAGCAGTC
CGCCCGCGGCGAGCGAGCCTACGACATCTATTCGCGCCTGCTGAAGGAGCGGATCATCTTCCTGGTCGGCCAGGTCGAGG
ACTACATGGCCAACCTGGTGGTTGCCCAGTTGCTGTTCCTGGAGGCTGAAAATCCCGAGAAGGACATTCATCTCTACATC
AACTCGCCGGGTGGCTCGGTGACTGCCGGGATGTCCATCTACGACACCATGCAGTTCATCAAGCCCAACGTCTCGACCAC
CTGTATCGGCCAGGCGTGCAGCATGGGTGCCCTGCTGCTTGCGGGCGGTGCCGCCGGCAAGCGCTACTGCCTGCCGCATT
CGCGGATGATGATCCACCAGCCGCTGGGAGGTTTCCAGGGCCAGGCCTCGGATATCGAGATCCATGCCAAGGAAATCCTC
TTCATCAAGGAGCGTCTGAACCAGATCCTGGCGCACCACACCGGCCAGCCCCTGGACGTCATTGCCCGCGATACCGATCG
TGACCGCTTCATGAGCGGTGACGAAGCCGTCAAGTATGGCCTGATCGACAAGGTCATGACCCAGCGCGACCTGGCCGTCT
AA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(29-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2Z9P5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

67.708

90.141

0.61
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.789

89.202

0.587
  clpP Lactococcus lactis subsp. cremoris KW2

53.299

92.488

0.493
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.777

92.488

0.479
  clpP Streptococcus mutans UA159

50.51

92.019

0.465
  clpP Streptococcus pneumoniae R6

50.769

91.549

0.465
  clpP Streptococcus pneumoniae TIGR4

50.769

91.549

0.465
  clpP Streptococcus pyogenes JRS4

50.769

91.549

0.465
  clpP Streptococcus pyogenes MGAS315

50.769

91.549

0.465
  clpP Streptococcus thermophilus LMG 18311

50.769

91.549

0.465
  clpP Streptococcus thermophilus LMD-9

50.769

91.549

0.465
  clpP Streptococcus pneumoniae Rx1

50.769

91.549

0.465
  clpP Streptococcus pneumoniae D39

50.769

91.549

0.465