Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GDY38_RS08720 Genome accession   NZ_CP045724
Coordinates   1893993..1895522 (-) Length   509 a.a.
NCBI ID   WP_015702557.1    Uniprot ID   -
Organism   Pasteurella multocida strain PM22     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1888993..1900522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GDY38_RS08705 (GDY38_08705) - 1889273..1890115 (+) 843 WP_015702556.1 divergent polysaccharide deacetylase family protein -
  GDY38_RS08710 (GDY38_08710) - 1890136..1890822 (+) 687 WP_005757690.1 hypothetical protein -
  GDY38_RS11075 - 1890929..1892494 (-) 1566 WP_016532840.1 TonB-dependent receptor domain-containing protein -
  GDY38_RS11080 - 1892555..1893490 (-) 936 WP_041423264.1 TonB-dependent receptor plug domain-containing protein -
  GDY38_RS08720 (GDY38_08720) comM 1893993..1895522 (-) 1530 WP_015702557.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GDY38_RS08725 (GDY38_08725) yihA 1895630..1896247 (-) 618 WP_005718080.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  GDY38_RS08730 (GDY38_08730) - 1896358..1897227 (+) 870 WP_014668443.1 VirK/YbjX family protein -
  GDY38_RS08735 (GDY38_08735) trmL 1897301..1897777 (-) 477 WP_005755093.1 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL -
  GDY38_RS08740 (GDY38_08740) - 1897872..1898888 (-) 1017 WP_015702558.1 hypothetical protein -
  GDY38_RS08745 (GDY38_08745) - 1898913..1900433 (-) 1521 WP_041423266.1 surface lipoprotein assembly modifier -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55907.32 Da        Isoelectric Point: 9.4036

>NTDB_id=396374 GDY38_RS08720 WP_015702557.1 1893993..1895522(-) (comM) [Pasteurella multocida strain PM22]
MSLAIVYSRASMGVQAPLVTIEVHFSNGKPQFNLVGLPEKTVKEAQDRVRSALLNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGMLAASGQIDPQKLQQFEFVGELALTGDLRAVHGVIPAILAAQKAKRKLIIASQNANEASLVSQQDTYFAQHL
LEVVNFLNDHSTLPLASDLPTQHDPALLATTQKDLTDIIGQSHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTTLLP
EMNDQETIETAAVTSLIHHELNFHNWKQRPFRAPHHSASTPALVGGGTIPKPGEISLAHNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLIAAMNPSPTGHYQGTHNRTSPQQILRYLNRLSGPFLDRFDLSIEVPLLPKGALQQ
QTDRGESSAQVREKVLKVRDIQLARAGKINAYLTSKEIERDCKISDQDALFLENALAKLGLSVRAYHRILKVARTIADLN
NECQIQQCHLAEALGYRAMDRLLQKLSAI

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=396374 GDY38_RS08720 WP_015702557.1 1893993..1895522(-) (comM) [Pasteurella multocida strain PM22]
ATGTCACTTGCAATTGTTTATAGTCGCGCCTCAATGGGCGTACAAGCCCCTTTAGTCACCATTGAGGTGCATTTCAGTAA
TGGTAAACCGCAATTCAACTTAGTCGGCTTACCCGAAAAAACCGTCAAAGAAGCACAAGATCGCGTACGCAGCGCCTTGC
TCAATGCTCAATTTAAATACCCCGCTAAACGGATCACGGTCAATCTCGCCCCCGCCGATTTACCCAAAGAAGGCGGACGT
TTTGATTTACCGATCGCCATTGGTATGCTCGCCGCTTCTGGTCAAATTGATCCACAAAAGTTACAACAATTTGAATTTGT
GGGTGAGTTAGCGCTAACCGGTGATTTACGTGCAGTACATGGCGTCATCCCCGCGATCCTTGCTGCACAAAAAGCCAAGC
GGAAATTGATTATCGCCAGTCAAAATGCCAATGAAGCCTCGTTAGTTTCCCAGCAAGACACCTATTTTGCGCAACATTTA
TTAGAAGTCGTCAATTTCCTCAATGATCATTCCACGTTACCTTTAGCCTCAGACCTGCCTACACAACATGATCCAGCCCT
TTTAGCAACAACACAAAAAGATTTAACCGATATTATCGGACAATCCCATGCTAAACGCGCTTTAACCATTGCTGCCGCAG
GACAACATAATCTGCTTTTTTTGGGGCCGCCCGGTACAGGAAAGACCATGCTCGCCAGCCGATTAACTACCTTGTTACCA
GAAATGAACGATCAAGAAACCATTGAAACCGCCGCAGTGACAAGCCTTATTCATCATGAATTGAATTTTCATAATTGGAA
ACAACGCCCATTTCGTGCCCCTCATCACAGCGCTTCAACACCAGCTTTAGTAGGGGGCGGCACCATACCCAAACCCGGTG
AAATTTCGCTCGCACACAATGGGGTGTTATTTCTCGATGAGTTACCAGAATTTGAACGTAAAGTATTAGATGCCTTACGT
CAACCTTTGGAAAGTGGTGAAATTATCATTTCGCGTGCCAATGCAAAAATTCAATTCCCCGCTCGTTTTCAATTAATTGC
CGCCATGAATCCTAGCCCAACGGGACATTATCAAGGTACTCACAATCGCACCTCACCACAACAAATCTTGCGTTATCTCA
ATCGCTTATCCGGTCCGTTTTTAGATCGCTTTGATTTGTCAATCGAAGTCCCTTTACTACCCAAAGGCGCGTTACAACAG
CAAACAGATCGGGGCGAAAGTAGCGCACAAGTGAGAGAAAAAGTATTAAAAGTACGCGACATACAACTGGCGCGTGCGGG
GAAAATTAATGCTTATTTGACCAGTAAAGAAATTGAGCGAGACTGTAAGATCAGTGATCAAGATGCGTTATTTTTAGAAA
ATGCCTTAGCTAAATTGGGGTTATCCGTACGCGCCTATCATCGTATTTTAAAAGTAGCACGCACCATTGCAGACTTAAAT
AATGAATGCCAAATTCAACAATGCCACCTCGCCGAAGCACTGGGTTATCGGGCGATGGATAGGTTGTTACAGAAGTTATC
TGCAATATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

84.221

99.607

0.839
  comM Glaesserella parasuis strain SC1401

77.515

99.607

0.772
  comM Vibrio cholerae strain A1552

66.012

100

0.66
  comM Vibrio campbellii strain DS40M4

65.551

99.804

0.654
  comM Legionella pneumophila str. Paris

51.4

98.232

0.505
  comM Legionella pneumophila strain ERS1305867

51.4

98.232

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.333

100

0.468

Multiple sequence alignment