Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LS451_RS04695 Genome accession   NZ_CP045563
Coordinates   908965..910203 (-) Length   412 a.a.
NCBI ID   WP_056957472.1    Uniprot ID   -
Organism   Fructilactobacillus sanfranciscensis strain LS451     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 903965..915203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LS451_RS04685 (LS451_04685) - 906370..907175 (-) 806 Protein_897 TIGR00282 family metallophosphoesterase -
  LS451_RS04690 (LS451_04690) rny 907261..908820 (-) 1560 WP_056957471.1 ribonuclease Y -
  LS451_RS04695 (LS451_04695) cinA 908965..910203 (-) 1239 WP_056957472.1 competence/damage-inducible protein A Machinery gene
  LS451_RS04700 (LS451_04700) pgsA 910223..910810 (-) 588 WP_041817852.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LS451_RS04705 (LS451_04705) - 910881..911765 (-) 885 WP_056957473.1 RodZ family helix-turn-helix domain-containing protein -
  LS451_RS04710 (LS451_04710) - 911836..913119 (-) 1284 WP_225361967.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  LS451_RS04715 (LS451_04715) - 913109..914371 (-) 1263 WP_056957475.1 EF-P 5-aminopentanol modification-associated protein YfmF -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45036.43 Da        Isoelectric Point: 4.6321

>NTDB_id=395189 LS451_RS04695 WP_056957472.1 908965..910203(-) (cinA) [Fructilactobacillus sanfranciscensis strain LS451]
MNAEIITVGTEILLGEIVDTSSPFIARRLANLGIDVYFEDTVGDNYDRLESTISLAESRSDLVVLTGGLGPTEDDITKIS
LAQHLGLDLEIDKKALKKINDFYATYALGKPSNADMMAKYIEGAEILPNEKGFAVGMFLKTDACDYLVLPGPPVEMQYMF
TNFAMPKLAKLTSGSSLIDSRVLRFFGIGETELEKDLKELIDNQTNPTLATYAKCNEVTLRITASGETKSEIKELIDNME
KRVLAIVGQYFYGYGDNNSLEKVVVNLLKNKELSITAAESLTSGMFQSRIGNVSGASEVFPGGFVTYSADAKEQLLNIPT
EIIKKYGVVSSETAEYMAKNSKDKMKTDIGVSFTGVAGPDSLEGHPAGFFWVGLALPNGQVITKSVNFAKARNEVRDYAT
KTGFKLIYDNLK

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=395189 LS451_RS04695 WP_056957472.1 908965..910203(-) (cinA) [Fructilactobacillus sanfranciscensis strain LS451]
ATGAATGCAGAAATAATTACTGTTGGAACAGAAATTTTACTTGGTGAAATTGTTGATACTAGTTCACCATTTATTGCCAG
AAGATTAGCTAATCTCGGAATTGATGTTTATTTTGAAGACACAGTTGGTGATAATTATGATCGTTTAGAGTCAACTATCA
GTTTGGCCGAAAGTCGGAGTGATTTAGTTGTTTTAACCGGAGGACTTGGTCCAACGGAAGATGACATTACAAAAATATCT
TTGGCACAACATTTAGGACTAGATTTAGAAATTGATAAAAAGGCATTAAAAAAAATTAATGATTTCTATGCAACATATGC
TCTTGGAAAACCAAGTAATGCTGATATGATGGCTAAATACATTGAAGGCGCTGAAATCTTACCAAATGAAAAAGGTTTTG
CTGTCGGAATGTTTTTAAAAACTGATGCATGTGATTATTTGGTATTACCAGGGCCACCAGTAGAAATGCAATATATGTTT
ACTAATTTTGCTATGCCAAAATTAGCTAAATTAACCAGCGGTAGTTCATTAATTGACTCACGCGTACTTCGTTTCTTTGG
AATTGGCGAAACTGAATTAGAAAAGGATTTAAAAGAACTAATTGATAATCAAACTAATCCAACCCTTGCAACTTACGCTA
AATGTAATGAAGTAACTCTTCGAATCACTGCTAGTGGAGAAACTAAGTCTGAGATTAAAGAATTAATTGACAACATGGAA
AAGCGTGTCTTAGCGATTGTTGGTCAATATTTCTATGGTTACGGAGATAATAACTCCCTTGAAAAAGTTGTAGTTAATTT
GTTAAAAAACAAAGAATTATCAATTACAGCTGCAGAATCATTAACAAGTGGAATGTTCCAAAGTCGGATTGGAAATGTTT
CAGGAGCGTCTGAGGTATTCCCAGGTGGCTTCGTAACTTATTCTGCCGATGCTAAAGAACAATTATTGAATATTCCAACT
GAGATAATTAAAAAATACGGGGTTGTTTCTTCTGAAACTGCCGAATATATGGCAAAGAATTCCAAAGATAAAATGAAAAC
TGATATTGGGGTTTCATTTACTGGGGTTGCTGGACCAGATAGTTTAGAAGGACATCCTGCTGGATTTTTCTGGGTTGGTT
TAGCGTTACCAAATGGTCAGGTAATTACTAAAAGTGTTAACTTTGCAAAAGCGAGAAATGAAGTTCGTGATTATGCAACT
AAGACAGGATTTAAATTAATATATGACAATTTAAAGTGA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-410)

Probable molybdopterin binding domain (MoCF_biosynth)

(4-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis NCTC 12261

48.227

100

0.495
  cinA Streptococcus mitis SK321

48.227

100

0.495
  cinA Streptococcus pneumoniae Rx1

47.031

100

0.481
  cinA Streptococcus pneumoniae TIGR4

47.031

100

0.481
  cinA Streptococcus pneumoniae R6

47.031

100

0.481
  cinA Streptococcus pneumoniae D39

46.793

100

0.478
  cinA Streptococcus mutans UA159

46.747

100

0.471
  cinA Bacillus subtilis subsp. subtilis str. 168

42.963

98.301

0.422

Multiple sequence alignment