Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Machinery gene
Locus tag   HICON_RS03795 Genome accession   NC_014922
Coordinates   771342..771848 (+) Length   168 a.a.
NCBI ID   WP_006995134.1    Uniprot ID   A0AAV2U2E4
Organism   Haemophilus influenzae F3047     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 766342..776848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HICON_RS03775 (HICON_09730) - 766435..766764 (-) 330 WP_005629464.1 YbaB/EbfC family nucleoid-associated protein -
  HICON_RS03780 (HICON_09740) - 766933..767778 (-) 846 WP_013527433.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  HICON_RS03785 (HICON_09750) - 767851..770445 (-) 2595 WP_013527434.1 penicillin-binding protein 1A -
  HICON_RS03790 (HICON_09760) comA 770544..771341 (+) 798 WP_013527435.1 pilus assembly protein PilM Machinery gene
  HICON_RS03795 (HICON_09770) comB 771342..771848 (+) 507 WP_006995134.1 competence protein ComB Machinery gene
  HICON_RS03800 comC 771845..772366 (+) 522 WP_005662592.1 competence protein ComC Machinery gene
  HICON_RS03805 (HICON_09790) comD 772363..772776 (+) 414 WP_013527437.1 pilus assembly protein PilP Machinery gene
  HICON_RS03810 (HICON_09800) comE 772786..774123 (+) 1338 WP_013527438.1 type IV pilus secretin PilQ Machinery gene
  HICON_RS03815 (HICON_09810) - 774136..774822 (+) 687 WP_011272045.1 ComF family protein -
  HICON_RS03820 (HICON_09820) nfuA 774898..775494 (+) 597 WP_005649300.1 Fe-S biogenesis protein NfuA -
  HICON_RS03825 (HICON_09830) nudC 775561..776355 (+) 795 WP_005686893.1 NAD(+) diphosphatase -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 19737.61 Da        Isoelectric Point: 8.5473

>NTDB_id=39452 HICON_RS03795 WP_006995134.1 771342..771848(+) (comB) [Haemophilus influenzae F3047]
MSMNLLPWRTYQHQKRLRRLAFYIALFILLAINLMLAFSNLIEQQKQNLQAQQKSFEQLNQQLHKNTMQIDQLRSAVKVG
EVLTSIPNEQVKKSLQQLSELPFQQGELNKFKQDANNLSLEGNAQDQTEFELIHQFLKKHFPNVKLSQVQPEQDTLFFHF
DVEQGAEK

Nucleotide


Download         Length: 507 bp        

>NTDB_id=39452 HICON_RS03795 WP_006995134.1 771342..771848(+) (comB) [Haemophilus influenzae F3047]
ATGTCGATGAATTTATTGCCTTGGCGTACTTATCAACATCAAAAGCGTTTACGTCGTTTAGCTTTTTATATCGCTTTATT
TATCTTGCTTGCTATTAATTTAATGTTGGCTTTTAGCAATTTGATTGAACAACAGAAACAAAATTTGCAGGCACAGCAAA
AGTCGTTTGAACAACTTAATCAACAGCTTCATAAAAATACCATGCAAATTGATCAGTTACGCAGTGCGGTGAAAGTTGGT
GAAGTTTTGACATCTATTCCCAACGAGCAAGTAAAAAAGAGTTTACAACAGCTAAGTGAATTACCTTTTCAACAAGGAGA
ACTGAATAAATTTAAACAAGATGCGAATAACTTAAGCTTGGAAGGTAACGCGCAAGATCAAACAGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGTCAGGTTCAACCTGAACAAGATACATTGTTTTTTCACTTT
GATGTGGAACAAGGGGCGGAAAAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Haemophilus influenzae 86-028NP

98.81

100

0.988
  comB Haemophilus influenzae Rd KW20

98.81

100

0.988

Multiple sequence alignment