Detailed information    

insolico Bioinformatically predicted

Overview


Name   comM   Type   Machinery gene
Locus tag   GEA58_RS21315 Genome accession   NZ_CP045450
Coordinates   4484046..4485566 (+) Length   506 a.a.
NCBI ID   WP_032620478.1    Uniprot ID   A0AA37EMH2
Organism   Enterobacter hormaechei strain 14280161202     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context


Location: 4479046..4490566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GEA58_RS21290 ilvE 4480613..4481542 (-) 930 WP_003860182.1 branched-chain-amino-acid transaminase -
  GEA58_RS21295 ilvM 4481561..4481824 (-) 264 WP_003860184.1 acetolactate synthase 2 small subunit -
  GEA58_RS21300 ilvG 4481821..4483467 (-) 1647 WP_023304625.1 acetolactate synthase 2 catalytic subunit -
  GEA58_RS21305 ilvX 4483470..4483520 (-) 51 WP_166792073.1 peptide IlvX -
  GEA58_RS21310 ilvL 4483607..4483705 (-) 99 WP_001311244.1 ilv operon leader peptide -
  GEA58_RS21315 comM 4484046..4485566 (+) 1521 WP_032620478.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GEA58_RS21320 - 4485594..4485932 (-) 339 WP_006808641.1 DUF413 domain-containing protein -
  GEA58_RS21325 hdfR 4486051..4486872 (+) 822 WP_017693775.1 HTH-type transcriptional regulator HdfR -

Sequence


Protein


Download         Length: 506 a.a.        Molecular weight: 54704.64 Da        Isoelectric Point: 7.5496

>NTDB_id=394191 GEA58_RS21315 WP_032620478.1 4484046..4485566(+) (comM) [Enterobacter hormaechei strain 14280161202]
MSLSVVYTRAAIGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYAFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTPGLSSCEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLVAGHL
QEVCAWLEGRHELAEPQENDEVAPASPEDLSDIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIFSLVSSTSLHKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHLSRTRAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLSKLSGPFLDRFDLSLEIPLPPPGLLRQTGIRG
ESSATVRERVIAAQARQYARQNRLNARLDNSGIRQFCSLNAEDAGWLEETLTRFGLSIRAWQRLLKVARTVADVEGCPGI
ERRHLQEALSYRAIDRLLLHLQKMLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=394191 GEA58_RS21315 WP_032620478.1 4484046..4485566(+) (comM) [Enterobacter hormaechei strain 14280161202]
ATGTCACTGTCAGTTGTTTATACACGCGCGGCCATCGGCGTGAAGGCACCGCTTATTTCTGTAGAGGTTCACTTAAGTAA
TGGACTGCCCGGACTGACGCTGGTCGGCTTACCAGAAACGACCGTTAAAGAGGCGAGGGATCGCGTGCGCAGCGCAATTA
TTAATAGCGGTTATGCTTTTCCGGCGAAGAAGATCACCATTAACCTTGCGCCCGCCGATTTGCCAAAGGAGGGAGGGCGA
TATGATTTACCTATTGCTATAGCGCTTCTCGCGGCTTCTGAACAGCTCAATACGCCAGGGCTAAGCTCGTGTGAGTTCGT
GGGTGAATTAGCGCTTACAGGCGCGTTAAGAGGCGTTCCCGGAGCAATCTCGGGTGCGCTTGAAGCCATACGCGCGGGAA
GACAAATCATTGTGGCCAATGAAAATGCCTCTGAAGTAAGCCTTATCGCCGAAAAGGGGTGTCTTGTCGCAGGACATTTG
CAAGAGGTTTGCGCCTGGCTGGAAGGCCGACACGAGCTTGCCGAGCCGCAGGAGAATGACGAGGTGGCGCCAGCTTCGCC
CGAAGATCTCAGCGATATTATGGGTCAGGAACAGGGTAAGCGGGCGTTAGAGATAACGGCCGCGGGTGGGCATAACCTGT
TACTGATAGGTCCGCCAGGCACGGGGAAAACGATGCTGGCGAGCAGATTGAGCGGCCTGTTGCCACCCCTCAATAATCAT
GAAGCACTGGAAAGCGCCGCGATATTTAGCCTGGTCAGTTCTACGTCGCTGCATAAACAGTGGCGCCGCCGTCCTTTCCG
CTCTCCACACCACAGTGCGTCTCTTACCGCGATGGTGGGCGGGGGTTCGATCCCCGGACCGGGTGAAATCTCACTGGCGC
ACAACGGCATTTTGTTTCTGGATGAATTGCCAGAGTTTGAACGCCGCGTGCTGGATGCATTGCGGGAGCCGATTGAATCC
GGCGAAATCCATTTGTCTCGTACTCGGGCCAAAATAAGCTACCCTGCGCAGTTTCAGCTAGTCGCGGCGATGAACCCTAG
CCCTACGGGTCATTATCAGGGCAATCATAACCGCTGTACGCCGGAGCAGACGCTGCGCTATCTGAGTAAGCTGTCTGGCC
CCTTCCTCGACCGTTTTGATTTATCTCTCGAGATCCCCCTGCCCCCGCCCGGTCTGCTGAGGCAAACCGGTATTAGGGGC
GAAAGCTCAGCAACTGTGCGTGAACGGGTTATTGCGGCGCAGGCGCGGCAGTATGCTCGTCAGAACAGGCTGAATGCCCG
GCTGGATAACAGCGGGATCCGACAGTTTTGTTCTCTCAACGCTGAAGATGCAGGCTGGCTGGAAGAGACACTGACGCGGT
TTGGGCTATCCATTCGCGCGTGGCAGCGTTTGTTGAAAGTAGCGCGCACGGTCGCCGACGTGGAGGGCTGCCCCGGAATA
GAGAGGCGGCATTTGCAGGAGGCATTAAGTTACCGAGCAATCGATCGGCTGCTGTTGCATCTGCAAAAAATGCTGGCGTA
A


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.513

100

0.591

  comM Glaesserella parasuis strain SC1401

58.777

100

0.589

  comM Vibrio campbellii strain DS40M4

58.765

99.209

0.583

  comM Vibrio cholerae strain A1552

58.765

99.209

0.583

  comM Legionella pneumophila str. Paris

49.698

98.221

0.488

  comM Legionella pneumophila strain ERS1305867

49.698

98.221

0.488

  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.333

100

0.437


Multiple sequence alignment