Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   FIU87_RS17725 Genome accession   NZ_CP045403
Coordinates   3427285..3427866 (+) Length   193 a.a.
NCBI ID   WP_152445796.1    Uniprot ID   A0A5P9HSZ0
Organism   Bacillus sp. THAF10     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3422285..3432866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU87_RS17705 (FIU87_18165) - 3422694..3423623 (-) 930 WP_172971096.1 sortase -
  FIU87_RS17710 (FIU87_18170) - 3423684..3425018 (-) 1335 WP_253905457.1 copper amine oxidase -
  FIU87_RS17715 (FIU87_18175) - 3425272..3426210 (-) 939 WP_152445795.1 nuclease-related domain-containing protein -
  FIU87_RS17725 (FIU87_18190) clpP 3427285..3427866 (+) 582 WP_152445796.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  FIU87_RS17730 (FIU87_18195) - 3427908..3428165 (-) 258 WP_152445797.1 HPr family phosphocarrier protein -
  FIU87_RS17735 (FIU87_18200) whiA 3428247..3429188 (-) 942 WP_152445798.1 DNA-binding protein WhiA -
  FIU87_RS17740 (FIU87_18205) yvcK 3429250..3430221 (-) 972 WP_152445799.1 YvcK family protein -
  FIU87_RS17745 (FIU87_18210) rapZ 3430221..3431111 (-) 891 WP_152445800.1 RNase adapter RapZ -
  FIU87_RS17750 (FIU87_18215) - 3431138..3431596 (-) 459 WP_152446644.1 8-oxo-dGTP diphosphatase -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21059.22 Da        Isoelectric Point: 4.7055

>NTDB_id=393819 FIU87_RS17725 WP_152445796.1 3427285..3427866(+) (clpP) [Bacillus sp. THAF10]
MNLIPTVIEQTSRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKDISLYINSPGGSITAGMAIYDT
MNFIKPDVSTMCVGMAASMGAFLLSAGAKGKRFALPNSEVMIHQPLGGAQGQATEIEIAAKRILFLREKLNTILSENTGQ
PIEVISRDTDRDNFMTADRALEYGLIDKVIKNN

Nucleotide


Download         Length: 582 bp        

>NTDB_id=393819 FIU87_RS17725 WP_152445796.1 3427285..3427866(+) (clpP) [Bacillus sp. THAF10]
ATGAACTTAATTCCTACAGTTATTGAACAAACAAGCCGTGGGGAGCGCGCTTACGACATTTACTCCCGCTTATTAAAAGA
CCGCATCATTATGCTAGGTAGTGCGATTGATGATAACGTCGCTAACTCCATTGTGTCTCAGCTATTGTTCCTAGCAGCAG
AAGATCCAGAAAAGGATATTTCCCTATATATTAACAGTCCGGGTGGATCCATCACTGCTGGAATGGCAATCTATGATACG
ATGAATTTCATTAAGCCTGACGTTAGCACAATGTGTGTGGGAATGGCCGCTTCTATGGGTGCATTCTTATTATCAGCAGG
TGCAAAGGGCAAGCGTTTTGCTCTTCCAAACAGCGAAGTGATGATTCACCAACCGCTTGGAGGCGCACAAGGGCAAGCAA
CGGAAATTGAGATTGCGGCTAAACGCATCTTATTCCTTCGTGAAAAATTAAATACAATCCTTTCTGAAAACACTGGTCAA
CCAATTGAAGTAATCTCTCGCGACACAGACCGCGACAACTTCATGACGGCAGACCGCGCTTTAGAATACGGATTAATCGA
CAAAGTGATCAAAAATAACTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P9HSZ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

86.979

99.482

0.865
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

70.157

98.964

0.694
  clpP Streptococcus thermophilus LMD-9

61.658

100

0.617
  clpP Streptococcus thermophilus LMG 18311

61.658

100

0.617
  clpP Streptococcus pneumoniae D39

60.622

100

0.606
  clpP Streptococcus pneumoniae Rx1

60.622

100

0.606
  clpP Streptococcus pneumoniae R6

60.622

100

0.606
  clpP Streptococcus pneumoniae TIGR4

60.622

100

0.606
  clpP Lactococcus lactis subsp. cremoris KW2

60.104

100

0.601
  clpP Streptococcus mutans UA159

59.794

100

0.601
  clpP Streptococcus pyogenes JRS4

58.549

100

0.585
  clpP Streptococcus pyogenes MGAS315

58.549

100

0.585
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

58.031

100

0.58

Multiple sequence alignment