Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   FIU87_RS10115 Genome accession   NZ_CP045403
Coordinates   1931406..1931987 (-) Length   193 a.a.
NCBI ID   WP_152444480.1    Uniprot ID   A0A5P9HQL7
Organism   Bacillus sp. THAF10     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 1926406..1936987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU87_RS10090 (FIU87_10365) - 1926979..1927500 (-) 522 WP_152444475.1 cupin domain-containing protein -
  FIU87_RS10095 (FIU87_10370) - 1927570..1928022 (-) 453 WP_172971017.1 YndM family protein -
  FIU87_RS10100 (FIU87_10375) - 1928114..1929718 (-) 1605 WP_152444477.1 ABC transporter permease -
  FIU87_RS10105 (FIU87_10380) - 1929718..1930626 (-) 909 WP_152444478.1 ABC transporter ATP-binding protein -
  FIU87_RS10110 (FIU87_10385) - 1930783..1931367 (+) 585 WP_152444479.1 TetR/AcrR family transcriptional regulator -
  FIU87_RS10115 (FIU87_10390) clpP 1931406..1931987 (-) 582 WP_152444480.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  FIU87_RS10120 (FIU87_10395) - 1932005..1932664 (-) 660 WP_152444481.1 sigma-70 family RNA polymerase sigma factor -
  FIU87_RS10125 (FIU87_10400) - 1932840..1933163 (+) 324 WP_152444482.1 hypothetical protein -
  FIU87_RS10130 (FIU87_10405) - 1933218..1935524 (-) 2307 WP_172971018.1 YhgE/Pip domain-containing protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21433.63 Da        Isoelectric Point: 5.6953

>NTDB_id=393802 FIU87_RS10115 WP_152444480.1 1931406..1931987(-) (clpP) [Bacillus sp. THAF10]
MNTIPYVIEHSNRGERSYDIYSRLLKDRIIMIGSEINDNLANSVVAQLLFLAADDPEKDISIYINSPGGSTTAGFAILDT
MHYIKPDVRTICIGMAASFGAMLLMAGTKGKRLALPNSEIMIHQPLGGARGQATEIEISARRILKLKEELHRMIADYTGQ
SIEKIERDTDRDNFMTAEEAKNYGIIDEVIKKG

Nucleotide


Download         Length: 582 bp        

>NTDB_id=393802 FIU87_RS10115 WP_152444480.1 1931406..1931987(-) (clpP) [Bacillus sp. THAF10]
ATGAACACCATACCATATGTAATTGAGCATTCCAACCGAGGAGAGAGGTCCTATGATATATACTCTCGGTTATTAAAAGA
CCGAATCATTATGATAGGATCAGAAATAAATGATAATCTGGCAAATTCCGTTGTTGCACAGCTTCTGTTTTTAGCAGCGG
ATGACCCGGAGAAGGATATTTCCATTTATATTAACAGTCCAGGGGGCTCCACCACTGCTGGCTTTGCCATACTTGATACT
ATGCACTATATCAAACCAGATGTCCGAACGATTTGTATTGGAATGGCTGCCTCTTTTGGTGCGATGCTTTTAATGGCAGG
TACGAAGGGGAAGCGGCTAGCACTACCCAACAGCGAAATTATGATCCATCAGCCACTCGGTGGGGCAAGAGGTCAGGCAA
CTGAAATTGAAATATCCGCTCGGCGCATACTGAAGTTGAAAGAGGAGCTTCATCGGATGATTGCAGACTATACAGGGCAA
TCAATTGAAAAAATTGAACGGGATACAGACAGAGATAATTTTATGACCGCAGAGGAAGCAAAAAATTATGGAATTATCGA
TGAGGTCATAAAAAAAGGATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P9HQL7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

73.158

98.446

0.72
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

69.312

97.927

0.679
  clpP Streptococcus thermophilus LMD-9

57.143

97.927

0.56
  clpP Streptococcus thermophilus LMG 18311

57.143

97.927

0.56
  clpP Streptococcus pneumoniae D39

56.085

97.927

0.549
  clpP Streptococcus pneumoniae Rx1

56.085

97.927

0.549
  clpP Streptococcus pneumoniae R6

56.085

97.927

0.549
  clpP Streptococcus pneumoniae TIGR4

56.085

97.927

0.549
  clpP Streptococcus pyogenes JRS4

55.263

98.446

0.544
  clpP Streptococcus pyogenes MGAS315

55.263

98.446

0.544
  clpP Lactococcus lactis subsp. cremoris KW2

54.737

98.446

0.539
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

53.158

98.446

0.523
  clpP Streptococcus mutans UA159

53.158

98.446

0.523

Multiple sequence alignment