Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   FIV01_RS09995 Genome accession   NZ_CP045350
Coordinates   2160226..2160525 (-) Length   99 a.a.
NCBI ID   WP_152430871.1    Uniprot ID   A0A5P9CLA3
Organism   Vibrio aquimaris strain THAF100     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2155226..2165525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIV01_RS09970 (FIV01_10080) lapB 2155435..2156604 (-) 1170 WP_152430867.1 lipopolysaccharide assembly protein LapB -
  FIV01_RS09975 (FIV01_10085) - 2156630..2156914 (-) 285 WP_152430868.1 lipopolysaccharide assembly protein LapA domain-containing protein -
  FIV01_RS09980 (FIV01_10090) ihfB 2157140..2157445 (-) 306 WP_308218906.1 integration host factor subunit beta -
  FIV01_RS09985 (FIV01_10095) rpsA 2157632..2159302 (-) 1671 WP_152430869.1 30S ribosomal protein S1 -
  FIV01_RS09990 (FIV01_10100) cmk 2159406..2160086 (-) 681 WP_152430870.1 (d)CMP kinase -
  FIV01_RS09995 (FIV01_10105) comEA 2160226..2160525 (-) 300 WP_152430871.1 helix-hairpin-helix domain-containing protein Machinery gene
  FIV01_RS10000 (FIV01_10110) ppiD 2160664..2162523 (-) 1860 WP_152430872.1 peptidylprolyl isomerase -
  FIV01_RS10005 (FIV01_10115) - 2162727..2163020 (-) 294 WP_308218903.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 10988.57 Da        Isoelectric Point: 7.9569

>NTDB_id=393570 FIV01_RS09995 WP_152430871.1 2160226..2160525(-) (comEA) [Vibrio aquimaris strain THAF100]
MIRNFTTTILVILACYSSIVYSQNAPTNEKYSQIEITVNINTAQADELATLLSGVGLKKAQAIVKYRDENGPFQRVEDLA
QVKGIGDSLVDKNRTRIQL

Nucleotide


Download         Length: 300 bp        

>NTDB_id=393570 FIV01_RS09995 WP_152430871.1 2160226..2160525(-) (comEA) [Vibrio aquimaris strain THAF100]
ATGATACGTAACTTTACGACCACTATTTTAGTAATATTGGCGTGCTACAGCTCAATTGTGTACTCGCAGAATGCGCCAAC
AAATGAAAAATATTCACAGATAGAAATTACGGTAAATATTAATACCGCTCAAGCTGATGAACTGGCGACCCTTCTCAGTG
GAGTAGGTCTGAAGAAAGCGCAAGCAATTGTTAAGTACAGAGATGAAAATGGGCCATTTCAGCGGGTTGAGGACTTGGCT
CAAGTTAAGGGGATAGGAGATTCTCTGGTAGACAAAAACCGAACTCGTATCCAATTATGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(36-97)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P9CLA3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio campbellii strain DS40M4

50

98.99

0.495
  comEA Vibrio cholerae C6706

53.933

89.899

0.485
  comEA Vibrio cholerae strain A1552

53.933

89.899

0.485
  comEA Vibrio parahaemolyticus RIMD 2210633

60.563

71.717

0.434
  comEA Acinetobacter baylyi ADP1

48.148

81.818

0.394
  comEA/comE1 Glaesserella parasuis strain SC1401

46.835

79.798

0.374

Multiple sequence alignment