Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HPT10_RS28745 Genome accession   NZ_CP053705
Coordinates   6218437..6219930 (+) Length   497 a.a.
NCBI ID   WP_171889222.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PAC6     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6213437..6224930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPT10_RS28715 (HPT10_28745) - 6213499..6214413 (-) 915 WP_057384654.1 fimbrial protein -
  HPT10_RS28720 (HPT10_28750) sutA 6214909..6215226 (-) 318 WP_003096440.1 transcriptional regulator SutA -
  HPT10_RS28725 (HPT10_28755) - 6215304..6215729 (-) 426 WP_058167262.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HPT10_RS28730 (HPT10_28760) - 6215990..6217318 (-) 1329 WP_003109815.1 ammonium transporter -
  HPT10_RS28735 (HPT10_28765) glnK 6217358..6217696 (-) 339 WP_003096476.1 P-II family nitrogen regulator -
  HPT10_RS28740 (HPT10_28770) - 6218136..6218396 (+) 261 WP_003096478.1 accessory factor UbiK family protein -
  HPT10_RS28745 (HPT10_28775) comM 6218437..6219930 (+) 1494 WP_171889222.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HPT10_RS28750 (HPT10_28780) betT 6220055..6222039 (+) 1985 Protein_5701 choline BCCT transporter BetT -
  HPT10_RS28755 (HPT10_28785) pchP 6222082..6223131 (-) 1050 WP_019485942.1 phosphorylcholine phosphatase -
  HPT10_RS28760 (HPT10_28790) - 6223282..6224199 (-) 918 WP_073646687.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53098.10 Da        Isoelectric Point: 8.1525

>NTDB_id=393498 HPT10_RS28745 WP_171889222.1 6218437..6219930(+) (comM) [Pseudomonas aeruginosa strain PAC6]
MSLAIVHSRAQVGVEAPCVSVEAHLANGLPSLTLVGLPETAVRESKDRVRSALLNAGFNFPARRITLNLAPADLPKDGGR
FDLAIALGILAASGQLPGTALDGLECLGELALSGAIRPVRGVLPAALAARDARRVLVVPKENAEEASLASGLTVFAVDHL
LEIAGHLSGQAPLLPYQARGLLRAPFPYPDLAEVQGQAAAKRALLVAAAGAHNLLLSGPPGTGKTLLASRLPGLLPALDE
DEALEVAAIHSVASHVPLRHWPQRPFRQPHHSASAPALVGGGSRPQPGEITLAHQGVLFLDELPEFERKVLEVLREPLES
GEIVIARANGRVRFPARFQLVAAMNPCPCGYLGDPSGRCRCTPEQVQRYRGKLSGPLLDRIDLHVSVLRESTSLQPGHGE
TATAEVSERVGAARQRQLARQGCANAHLDLQAMHRNCALAEADRRWLEAAGERLELSLRALHRILKVARTLADLERIDAI
ERRHLAEALQYRAMTST

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=393498 HPT10_RS28745 WP_171889222.1 6218437..6219930(+) (comM) [Pseudomonas aeruginosa strain PAC6]
ATGTCCCTGGCGATTGTCCACAGCCGAGCCCAGGTCGGCGTCGAAGCCCCCTGCGTCAGCGTCGAGGCGCACCTGGCCAA
CGGCCTGCCTTCGCTGACCCTGGTCGGCCTGCCGGAAACCGCGGTGCGCGAGAGCAAGGACCGCGTGCGCAGCGCCCTGC
TCAATGCCGGTTTCAACTTCCCCGCGCGGCGCATCACCCTCAACCTCGCCCCCGCCGACCTGCCCAAGGACGGCGGTCGC
TTCGACCTGGCCATCGCACTCGGCATCCTCGCCGCCAGCGGCCAGTTGCCCGGCACCGCCCTCGACGGCCTGGAGTGCCT
TGGCGAACTGGCCCTGTCCGGGGCGATCCGACCAGTGCGAGGCGTATTGCCGGCCGCGCTGGCGGCGCGCGACGCAAGGC
GCGTTCTGGTGGTACCGAAGGAAAATGCCGAAGAGGCCAGCCTGGCCAGCGGGCTGACGGTGTTCGCCGTGGACCACCTG
CTGGAGATCGCCGGACACCTCTCCGGCCAGGCCCCGCTGCTGCCCTACCAGGCCCGCGGCCTGCTCCGCGCGCCCTTCCC
TTATCCAGACCTGGCCGAGGTCCAGGGCCAGGCCGCCGCCAAGCGCGCCCTGCTGGTGGCCGCCGCCGGCGCGCACAACC
TGTTGCTCAGCGGCCCGCCAGGCACCGGCAAGACCCTCCTGGCCAGCCGCCTGCCCGGCCTGCTGCCGGCGCTCGACGAG
GACGAGGCCCTGGAGGTCGCAGCGATCCATTCGGTGGCCAGCCACGTCCCCCTCAGGCACTGGCCGCAGCGACCGTTCCG
CCAGCCGCACCACTCCGCCTCCGCGCCGGCCCTGGTCGGCGGCGGCAGCCGCCCGCAGCCGGGCGAGATCACCCTGGCGC
ACCAGGGCGTGCTGTTCCTCGACGAACTGCCGGAGTTCGAGCGCAAGGTCCTGGAGGTCCTGCGCGAGCCGCTGGAAAGC
GGCGAGATCGTCATTGCCCGGGCCAACGGCCGGGTACGTTTCCCGGCGCGCTTCCAACTGGTGGCGGCGATGAATCCCTG
TCCCTGTGGCTACCTCGGCGATCCCAGTGGCCGCTGCCGCTGCACCCCGGAACAGGTCCAGCGCTACCGGGGCAAGCTGT
CCGGACCGCTGCTCGATCGCATCGACCTGCACGTCAGCGTGCTCCGCGAAAGCACCAGCCTGCAGCCAGGACACGGCGAA
ACCGCTACCGCCGAGGTCAGCGAACGGGTGGGCGCCGCACGGCAACGGCAACTGGCCCGCCAGGGCTGCGCCAATGCCCA
TCTCGATCTCCAGGCGATGCACCGCAATTGTGCACTCGCCGAAGCGGACCGCCGCTGGCTGGAGGCTGCCGGAGAGCGCC
TGGAACTTTCCTTGCGCGCCTTGCATCGCATACTCAAGGTGGCCCGGACGCTGGCCGACCTGGAGCGCATCGATGCCATC
GAACGCCGGCACCTGGCGGAAGCCCTGCAGTATCGGGCAATGACCTCCACGTGA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.74

100

0.567
  comM Haemophilus influenzae Rd KW20

55.644

100

0.565
  comM Vibrio cholerae O1 biovar El Tor strain E7946

56.338

100

0.563
  comM Vibrio cholerae strain A1552

56.338

100

0.563
  comM Glaesserella parasuis strain SC1401

54.582

100

0.551
  comM Acinetobacter baylyi ADP1

53.614

100

0.537
  comM Legionella pneumophila str. Paris

49.703

100

0.505
  comM Legionella pneumophila strain ERS1305867

49.703

100

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.866

100

0.469
  comM Helicobacter pylori 26695

39.044

100

0.394