Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   HO395_RS02240 Genome accession   NZ_CP053603
Coordinates   459569..460192 (+) Length   207 a.a.
NCBI ID   WP_133412402.1    Uniprot ID   -
Organism   Escherichia coli strain Dam/Dcm     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 454569..465192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HO395_RS02220 (HO395_02220) ampG 454962..456437 (-) 1476 WP_000098429.1 muropeptide MFS transporter AmpG -
  HO395_RS02225 (HO395_02225) yajG 456481..457059 (-) 579 WP_001295326.1 lipoprotein -
  HO395_RS02230 (HO395_02230) bolA 457364..457681 (+) 318 WP_000973448.1 transcriptional regulator BolA -
  HO395_RS02235 (HO395_02235) tig 458025..459323 (+) 1299 WP_001198386.1 trigger factor -
  HO395_RS02240 (HO395_02240) clpP 459569..460192 (+) 624 WP_133412402.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  HO395_RS02245 (HO395_02245) clpX 460318..461592 (+) 1275 WP_000130305.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  HO395_RS02250 (HO395_02250) lon 461780..464134 (+) 2355 WP_001295325.1 endopeptidase La -
  HO395_RS02255 (HO395_02255) hupB 464325..464615 (+) 291 WP_254892905.1 nucleoid-associated protein HU-beta -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23245.72 Da        Isoelectric Point: 5.9382

>NTDB_id=392602 HO395_RS02240 WP_133412402.1 459569..460192(+) (clpP) [Escherichia coli strain Dam/Dcm]
MSYSGERDNFARHMALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSP
GGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVK
GRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN

Nucleotide


Download         Length: 624 bp        

>NTDB_id=392602 HO395_RS02240 WP_133412402.1 459569..460192(+) (clpP) [Escherichia coli strain Dam/Dcm]
ATGTCATACAGCGGCGAACGAGATAACTTTGCACGCCATATGGCGCTGGTGCCGATGGTCATTGAACAGACCTCACGCGG
TGAGCGCTCTTTTGATATCTATTCTCGTCTACTTAAGGAACGCGTCATTTTTCTGACTGGCCAGGTTGAAGACCACATGG
CTAACCTGATTGTGGCGCAGATGCTGTTCCTGGAAGCGGAAAACCCAGAAAAAGATATCTATCTGTACATTAACTCCCCA
GGCGGGGTGATCACTGCCGGGATGTCTATCTATGACACCATGCAGTTTATCAAGCCTGATGTCAGCACCATCTGTATGGG
CCAGGCGGCCTCGATGGGCGCTTTCTTGCTGACCGCAGGGGCAAAAGGTAAACGTTTTTGCCTGCCGAATTCGCGCGTGA
TGATTCACCAACCGTTGGGCGGCTACCAGGGCCAGGCGACCGATATCGAAATTCATGCCCGTGAAATTCTGAAAGTTAAA
GGGCGCATGAATGAACTTATGGCGCTTCATACGGGTCAATCATTAGAACAGATTGAACGTGATACCGAGCGCGATCGCTT
CCTTTCCGCCCCTGAAGCGGTGGAATACGGTCTGGTCGATTCGATTCTGACCCATCGTAATTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(26-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

69.792

92.754

0.647
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.617

90.821

0.623
  clpP Lactococcus lactis subsp. cremoris KW2

56.701

93.72

0.531
  clpP Streptococcus pneumoniae R6

55.155

93.72

0.517
  clpP Streptococcus pneumoniae TIGR4

55.155

93.72

0.517
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

55.155

93.72

0.517
  clpP Streptococcus pneumoniae Rx1

55.155

93.72

0.517
  clpP Streptococcus pneumoniae D39

55.155

93.72

0.517
  clpP Streptococcus thermophilus LMD-9

54.922

93.237

0.512
  clpP Streptococcus thermophilus LMG 18311

54.922

93.237

0.512
  clpP Streptococcus pyogenes JRS4

55.263

91.787

0.507
  clpP Streptococcus pyogenes MGAS315

55.263

91.787

0.507
  clpP Streptococcus mutans UA159

53.886

93.237

0.502