Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | LG542_RS03430 | Genome accession | NZ_CP045007 |
| Coordinates | 686323..687219 (+) | Length | 298 a.a. |
| NCBI ID | WP_057908790.1 | Uniprot ID | - |
| Organism | Latilactobacillus graminis strain LG542 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 681323..692219
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LG542_RS03395 (LG542_03400) | - | 681571..682338 (+) | 768 | WP_057908784.1 | accessory Sec system protein Asp2 | - |
| LG542_RS03400 (LG542_03405) | - | 682348..683004 (+) | 657 | WP_057908785.1 | helix-turn-helix domain-containing protein | - |
| LG542_RS03405 (LG542_03410) | - | 682985..683887 (+) | 903 | WP_057908786.1 | hypothetical protein | - |
| LG542_RS03415 (LG542_03420) | - | 684419..684796 (-) | 378 | WP_057908787.1 | hypothetical protein | - |
| LG542_RS03420 (LG542_03425) | - | 684898..685398 (+) | 501 | WP_057908788.1 | VanZ family protein | - |
| LG542_RS03425 (LG542_03430) | - | 685488..686219 (+) | 732 | WP_057908789.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| LG542_RS03430 (LG542_03435) | comGA | 686323..687219 (+) | 897 | WP_057908790.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| LG542_RS03435 (LG542_03440) | comGB | 687191..688192 (+) | 1002 | WP_057908791.1 | type II secretion system F family protein | Machinery gene |
| LG542_RS03440 (LG542_03445) | comGC | 688189..688494 (+) | 306 | WP_057908792.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| LG542_RS03445 (LG542_03450) | - | 688475..688918 (+) | 444 | WP_162258690.1 | type II secretion system protein | - |
| LG542_RS03450 (LG542_03455) | - | 688905..689210 (+) | 306 | WP_057908794.1 | hypothetical protein | - |
| LG542_RS03455 (LG542_03460) | - | 689176..689661 (+) | 486 | WP_162258691.1 | ComGF family competence protein | - |
| LG542_RS03460 (LG542_03465) | - | 689639..689962 (+) | 324 | WP_057908796.1 | hypothetical protein | - |
| LG542_RS03465 (LG542_03470) | - | 690083..691102 (+) | 1020 | WP_226789480.1 | class I SAM-dependent methyltransferase | - |
Sequence
Protein
Download Length: 298 a.a. Molecular weight: 32930.02 Da Isoelectric Point: 6.1491
>NTDB_id=391194 LG542_RS03430 WP_057908790.1 686323..687219(+) (comGA) [Latilactobacillus graminis strain LG542]
MTNETLTVLLQKCVQEKAQDLYFRPIPTGWVVIARLATRLQTLQTVTESEGHQWLNQLKYQAGMDISETRRPQTGRMSLT
VEKAIIYLRLATVGDFLNRESLVVRFIYPIGTTYHCDDSQILTHLNRLIQQPGLLLFAGPTGSGKTTSLYYLAEQVMADK
MVVAIEDPIEIQQPAFLQLQVNEAAGLSYAALLKISLRLRPDTLIIGEIRDLQTAQHAISAALSGHLVLSTIHARSTIGV
IDRLLDLGISRAQLMACLVGVAYQSLVVDGQKVAAHYELATGQQLEEETCETTVNGSI
MTNETLTVLLQKCVQEKAQDLYFRPIPTGWVVIARLATRLQTLQTVTESEGHQWLNQLKYQAGMDISETRRPQTGRMSLT
VEKAIIYLRLATVGDFLNRESLVVRFIYPIGTTYHCDDSQILTHLNRLIQQPGLLLFAGPTGSGKTTSLYYLAEQVMADK
MVVAIEDPIEIQQPAFLQLQVNEAAGLSYAALLKISLRLRPDTLIIGEIRDLQTAQHAISAALSGHLVLSTIHARSTIGV
IDRLLDLGISRAQLMACLVGVAYQSLVVDGQKVAAHYELATGQQLEEETCETTVNGSI
Nucleotide
Download Length: 897 bp
>NTDB_id=391194 LG542_RS03430 WP_057908790.1 686323..687219(+) (comGA) [Latilactobacillus graminis strain LG542]
ATGACCAATGAGACACTAACAGTACTTTTGCAAAAATGTGTGCAAGAAAAAGCACAGGATCTCTATTTTCGCCCGATACC
GACTGGGTGGGTAGTTATTGCGCGCTTGGCCACTAGGTTGCAGACACTACAAACTGTAACGGAATCTGAGGGGCATCAAT
GGCTCAATCAGCTGAAATATCAAGCTGGGATGGACATTAGTGAGACACGTCGCCCACAAACTGGCCGGATGTCTTTAACA
GTCGAAAAGGCAATTATTTATTTACGGTTAGCAACGGTTGGCGATTTTTTAAATCGGGAAAGTCTCGTGGTACGGTTTAT
TTATCCCATCGGCACAACTTATCATTGTGATGATTCACAGATTTTAACACACTTAAATCGGTTGATTCAGCAGCCAGGGT
TATTGCTTTTTGCGGGTCCTACTGGTTCAGGGAAAACGACTAGCCTATATTATTTAGCCGAACAGGTGATGGCAGATAAG
ATGGTTGTTGCGATTGAAGACCCCATTGAAATTCAACAGCCAGCGTTTTTACAGCTACAAGTGAATGAGGCCGCTGGTTT
AAGTTATGCGGCATTGTTGAAAATTAGTCTGCGCTTACGCCCTGATACTTTAATTATTGGTGAAATTCGTGATTTGCAGA
CCGCGCAGCATGCTATTTCAGCTGCCTTAAGCGGCCATCTAGTCTTAAGCACAATTCATGCACGGAGTACGATTGGGGTA
ATTGATCGGCTATTGGATTTAGGTATTAGCCGGGCGCAATTAATGGCGTGTCTAGTTGGTGTTGCTTATCAATCACTGGT
GGTAGATGGTCAAAAGGTCGCGGCACATTATGAATTGGCAACAGGTCAACAATTGGAGGAGGAGACATGTGAAACCACGG
TTAACGGTTCAATTTAA
ATGACCAATGAGACACTAACAGTACTTTTGCAAAAATGTGTGCAAGAAAAAGCACAGGATCTCTATTTTCGCCCGATACC
GACTGGGTGGGTAGTTATTGCGCGCTTGGCCACTAGGTTGCAGACACTACAAACTGTAACGGAATCTGAGGGGCATCAAT
GGCTCAATCAGCTGAAATATCAAGCTGGGATGGACATTAGTGAGACACGTCGCCCACAAACTGGCCGGATGTCTTTAACA
GTCGAAAAGGCAATTATTTATTTACGGTTAGCAACGGTTGGCGATTTTTTAAATCGGGAAAGTCTCGTGGTACGGTTTAT
TTATCCCATCGGCACAACTTATCATTGTGATGATTCACAGATTTTAACACACTTAAATCGGTTGATTCAGCAGCCAGGGT
TATTGCTTTTTGCGGGTCCTACTGGTTCAGGGAAAACGACTAGCCTATATTATTTAGCCGAACAGGTGATGGCAGATAAG
ATGGTTGTTGCGATTGAAGACCCCATTGAAATTCAACAGCCAGCGTTTTTACAGCTACAAGTGAATGAGGCCGCTGGTTT
AAGTTATGCGGCATTGTTGAAAATTAGTCTGCGCTTACGCCCTGATACTTTAATTATTGGTGAAATTCGTGATTTGCAGA
CCGCGCAGCATGCTATTTCAGCTGCCTTAAGCGGCCATCTAGTCTTAAGCACAATTCATGCACGGAGTACGATTGGGGTA
ATTGATCGGCTATTGGATTTAGGTATTAGCCGGGCGCAATTAATGGCGTGTCTAGTTGGTGTTGCTTATCAATCACTGGT
GGTAGATGGTCAAAAGGTCGCGGCACATTATGAATTGGCAACAGGTCAACAATTGGAGGAGGAGACATGTGAAACCACGG
TTAACGGTTCAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Latilactobacillus sakei subsp. sakei 23K |
69.039 |
94.295 |
0.651 |
| comGA/cglA/cilD | Streptococcus mitis NCTC 12261 |
41.111 |
90.604 |
0.372 |
| comGA/cglA/cilD | Streptococcus pneumoniae D39 |
40.741 |
90.604 |
0.369 |
| comGA/cglA/cilD | Streptococcus pneumoniae Rx1 |
40.741 |
90.604 |
0.369 |
| comGA/cglA/cilD | Streptococcus pneumoniae R6 |
40.741 |
90.604 |
0.369 |
| comGA/cglA/cilD | Streptococcus pneumoniae TIGR4 |
40.741 |
90.604 |
0.369 |
| comGA/cglA | Streptococcus sobrinus strain NIDR 6715-7 |
41.825 |
88.255 |
0.369 |
| comYA | Streptococcus gordonii str. Challis substr. CH1 |
39.493 |
92.617 |
0.366 |