Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HLY11_RS08250 Genome accession   NZ_CP053258
Coordinates   1733386..1733991 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain GF4-3     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1728386..1738991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLY11_RS08230 (HLY11_08230) aes 1728527..1729486 (+) 960 WP_171459713.1 acetyl esterase -
  HLY11_RS08235 (HLY11_08235) hemH 1729483..1730445 (-) 963 WP_001250117.1 ferrochelatase -
  HLY11_RS08240 (HLY11_08240) adk 1730577..1731221 (-) 645 WP_001220233.1 adenylate kinase -
  HLY11_RS08245 (HLY11_08245) htpG 1731402..1733276 (-) 1875 WP_171459714.1 molecular chaperone HtpG -
  HLY11_RS08250 (HLY11_08250) recR 1733386..1733991 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  HLY11_RS08255 (HLY11_08255) ybaB 1733991..1734320 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  HLY11_RS08260 (HLY11_08260) dnaX 1734373..1736304 (-) 1932 WP_000122043.1 DNA polymerase III subunit gamma/tau -
  HLY11_RS08265 (HLY11_08265) apt 1736433..1736984 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  HLY11_RS08270 (HLY11_08270) ybaN 1737137..1737514 (-) 378 WP_001188905.1 DUF454 family protein -
  HLY11_RS08275 (HLY11_08275) priC 1737584..1738111 (+) 528 WP_000844856.1 primosomal replication protein N'' -
  HLY11_RS08280 (HLY11_08280) rsmS 1738125..1738286 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=391194 HLY11_RS08250 WP_001195025.1 1733386..1733991(-) (recR) [Escherichia coli strain GF4-3]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=391194 HLY11_RS08250 WP_001195025.1 1733386..1733991(-) (recR) [Escherichia coli strain GF4-3]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAGCTGGAAATGGTCGACGGCAC
CACGTTGTCGCATTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment