Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   LG542_RS03440 Genome accession   NZ_CP045007
Coordinates   688189..688494 (+) Length   101 a.a.
NCBI ID   WP_057908792.1    Uniprot ID   A0AA89I030
Organism   Latilactobacillus graminis strain LG542     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 683189..693494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG542_RS03415 (LG542_03420) - 684419..684796 (-) 378 WP_057908787.1 hypothetical protein -
  LG542_RS03420 (LG542_03425) - 684898..685398 (+) 501 WP_057908788.1 VanZ family protein -
  LG542_RS03425 (LG542_03430) - 685488..686219 (+) 732 WP_057908789.1 YebC/PmpR family DNA-binding transcriptional regulator -
  LG542_RS03430 (LG542_03435) comGA 686323..687219 (+) 897 WP_057908790.1 competence type IV pilus ATPase ComGA Machinery gene
  LG542_RS03435 (LG542_03440) comGB 687191..688192 (+) 1002 WP_057908791.1 type II secretion system F family protein Machinery gene
  LG542_RS03440 (LG542_03445) comGC 688189..688494 (+) 306 WP_057908792.1 competence type IV pilus major pilin ComGC Machinery gene
  LG542_RS03445 (LG542_03450) - 688475..688918 (+) 444 WP_162258690.1 type II secretion system protein -
  LG542_RS03450 (LG542_03455) - 688905..689210 (+) 306 WP_057908794.1 hypothetical protein -
  LG542_RS03455 (LG542_03460) - 689176..689661 (+) 486 WP_162258691.1 ComGF family competence protein -
  LG542_RS03460 (LG542_03465) - 689639..689962 (+) 324 WP_057908796.1 hypothetical protein -
  LG542_RS03465 (LG542_03470) - 690083..691102 (+) 1020 WP_226789480.1 class I SAM-dependent methyltransferase -
  LG542_RS03470 (LG542_03475) - 691124..692316 (+) 1193 Protein_664 acetate/propionate family kinase -
  LG542_RS03475 (LG542_03480) - 692376..692828 (+) 453 WP_057908799.1 hypothetical protein -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 11106.90 Da        Isoelectric Point: 8.6243

>NTDB_id=391196 LG542_RS03440 WP_057908792.1 688189..688494(+) (comGC) [Latilactobacillus graminis strain LG542]
MKKKRNAFTLIEMVVVLAVISLLVLLIAPNLMSQRSSAENKTDTALIATIQTQVELAEEDNQPAASLKDLAAGHYLSERQ
VEHAEKRGITIKGHEVVKNSK

Nucleotide


Download         Length: 306 bp        

>NTDB_id=391196 LG542_RS03440 WP_057908792.1 688189..688494(+) (comGC) [Latilactobacillus graminis strain LG542]
ATGAAGAAGAAAAGAAATGCTTTTACATTAATTGAAATGGTTGTCGTACTAGCTGTGATATCGCTCCTAGTATTGTTAAT
TGCCCCTAATTTAATGTCCCAAAGAAGTAGTGCTGAAAATAAGACAGACACTGCACTTATTGCAACCATTCAAACACAAG
TAGAATTGGCTGAAGAAGATAATCAGCCGGCTGCTAGTTTGAAAGATTTGGCTGCGGGTCATTATTTAAGTGAACGGCAA
GTTGAACATGCAGAAAAACGGGGGATAACGATCAAAGGACATGAAGTTGTTAAAAATTCAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Latilactobacillus sakei subsp. sakei 23K

58.763

96.04

0.564
  comGC Staphylococcus aureus MW2

37.755

97.03

0.366
  comGC Staphylococcus aureus N315

37.755

97.03

0.366

Multiple sequence alignment