Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   F8M43_RS18035 Genome accession   NZ_CP044498
Coordinates   3442429..3443022 (+) Length   197 a.a.
NCBI ID   WP_038427933.1    Uniprot ID   -
Organism   Bacillus subtilis strain ms-2     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3437429..3448022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F8M43_RS18005 psmA 3437684..3438019 (+) 336 WP_014480966.1 SMR family transporter -
  F8M43_RS18010 psmB 3438019..3438339 (+) 321 WP_003228222.1 QacE family quaternary ammonium compound efflux SMR transporter -
  F8M43_RS18015 yvdQ 3438375..3438887 (-) 513 WP_003243249.1 DUF3231 family protein -
  F8M43_RS18020 cotNP 3439139..3440482 (-) 1344 WP_029725961.1 FAD-binding oxidoreductase -
  F8M43_RS18025 cotR 3440838..3441800 (+) 963 WP_029725962.1 sporulation hydrolase CotR -
  F8M43_RS18035 clpP 3442429..3443022 (+) 594 WP_038427933.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  F8M43_RS18040 pgmB 3443084..3443758 (-) 675 WP_038427934.1 beta-phosphoglucomutase -
  F8M43_RS18045 malL 3443755..3445440 (-) 1686 WP_038427935.1 oligo-1,6-glucosidase -
  F8M43_RS18050 mdxK 3445433..3447706 (-) 2274 WP_038427936.1 maltose phosphorylase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21667.97 Da        Isoelectric Point: 4.9349

>NTDB_id=390588 F8M43_RS18035 WP_038427933.1 3442429..3443022(+) (clpP) [Bacillus subtilis strain ms-2]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGMAIYDT
MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQ
PLEVIERDTDRDNFKSAEEALDYGLIDKILTHTEDKK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=390588 F8M43_RS18035 WP_038427933.1 3442429..3443022(+) (clpP) [Bacillus subtilis strain ms-2]
ATGAATTTAATACCTACAGTCATTGAACAAACGAACCGCGGGGAAAGAGCGTATGACATTTATTCTCGTCTATTAAAGGA
TCGTATCATCATGCTTGGATCTGCGATTGATGACAACGTTGCGAACTCCATCGTGTCACAGCTTTTATTCTTAGCAGCAG
AAGACCCTGAAAAAGAAATTTCTCTTTATATCAACAGCCCGGGCGGCTCTATTACAGCCGGTATGGCGATCTATGATACC
ATGCAGTTTATTAAGCCGAAGGTATCTACAATTTGTATCGGTATGGCTGCGTCAATGGGCGCGTTCCTGCTTGCAGCCGG
CGAAAAAGGCAAACGCTATGCGCTTCCAAACAGTGAAGTCATGATTCACCAGCCTCTTGGCGGTGCGCAAGGTCAGGCGA
CAGAAATTGAAATTGCCGCGAAACGCATTCTCTTGCTTCGCGACAAATTAAACAAAGTCCTTGCTGAACGTACTGGCCAG
CCGCTTGAAGTGATCGAACGCGACACAGACCGTGATAACTTCAAGTCTGCTGAAGAAGCGCTTGATTACGGCCTGATTGA
CAAAATTTTGACTCACACAGAAGACAAAAAGTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

99.492

100

0.995
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.085

95.431

0.65
  clpP Streptococcus thermophilus LMG 18311

57.653

99.492

0.574
  clpP Streptococcus thermophilus LMD-9

57.653

99.492

0.574
  clpP Streptococcus pneumoniae D39

57.292

97.462

0.558
  clpP Streptococcus pneumoniae Rx1

57.292

97.462

0.558
  clpP Streptococcus pneumoniae R6

57.292

97.462

0.558
  clpP Streptococcus pneumoniae TIGR4

57.292

97.462

0.558
  clpP Streptococcus pyogenes JRS4

56.122

99.492

0.558
  clpP Streptococcus pyogenes MGAS315

56.122

99.492

0.558
  clpP Lactococcus lactis subsp. cremoris KW2

57.368

96.447

0.553
  clpP Streptococcus mutans UA159

54.822

100

0.548
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

55.263

96.447

0.533

Multiple sequence alignment