Detailed information NTG0390327

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: FSA31_RS08960
• Genome accession: NZ_CP044492
• Coordinates: 1784820..1785224 (-)
• Length: 134 a.a.
• NCBI ID: WP_002263438.1
• Uniprot ID: -
• Organism: Streptococcus mutans strain T8
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1779820..1790224

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FSA31_RS08925 (FSA31_1766)	-	1780302..1780742 (-)	441	WP_002263445.1	hypothetical protein	-
FSA31_RS08930 (FSA31_1767)	-	1780711..1780956 (-)	246	WP_002265894.1	helix-turn-helix transcriptional regulator	-
FSA31_RS08935 (FSA31_1768)	-	1781501..1782700 (-)	1200	WP_002263443.1	acetate kinase	-
FSA31_RS08940 (FSA31_1769)	comYH	1782759..1783712 (-)	954	WP_002264244.1	class I SAM-dependent methyltransferase	Machinery gene
FSA31_RS08945 (FSA31_1770)	comYG	1783767..1784156 (-)	390	WP_002263441.1	competence type IV pilus minor pilin ComGG	Machinery gene
FSA31_RS08950 (FSA31_1771)	comYF	1784134..1784568 (-)	435	WP_002274770.1	competence type IV pilus minor pilin ComGF	Machinery gene
FSA31_RS08955 (FSA31_1772)	comYE	1784555..1784848 (-)	294	WP_002263439.1	competence type IV pilus minor pilin ComGE	Machinery gene
FSA31_RS08960 (FSA31_1773)	comYD	1784820..1785224 (-)	405	WP_002263438.1	competence type IV pilus minor pilin ComGD	Machinery gene
FSA31_RS08965 (FSA31_1774)	comYC	1785211..1785525 (-)	315	WP_002263437.1	competence type IV pilus major pilin ComGC	Machinery gene
FSA31_RS08970 (FSA31_1775)	comYB	1785525..1786556 (-)	1032	WP_257646399.1	competence type IV pilus assembly protein ComGB	Machinery gene
FSA31_RS08975 (FSA31_1776)	comYA	1786492..1787433 (-)	942	WP_002263435.1	competence type IV pilus ATPase ComGA	Machinery gene
FSA31_RS08980 (FSA31_1777)	-	1787564..1787947 (-)	384	WP_002263434.1	DUF1033 family protein	-

Sequence

Protein

• Length: 134 a.a.
• Molecular weight: 15444.77 Da
• Isoelectric Point: 9.5619

>NTDB_id=390327 FSA31_RS08960 WP_002263438.1 1784820..1785224(-) (comYD) [Streptococcus mutans strain T8]
MSRIKAFTLIESLVTLAITSFLILSFSGSITQTFAKVEERLFFLSFEHLYRDTQKLSVYQRQDMTLILKSEYISNGVEVL
KIPKDVKLERNKTLHFDQAGGNSSLEKLVFQTSDEKRVTYQLYIGSGQYKKTES

Nucleotide

• Length: 405 bp

>NTDB_id=390327 FSA31_RS08960 WP_002263438.1 1784820..1785224(-) (comYD) [Streptococcus mutans strain T8]
ATGTCGCGAATTAAAGCTTTTACGCTTATAGAAAGTTTAGTGACTTTGGCAATTACTAGTTTTTTGATTTTAAGCTTTTC
AGGTAGTATAACTCAAACGTTTGCCAAAGTAGAAGAGCGTCTCTTTTTTCTTTCTTTTGAACATCTTTACCGTGACACGC
AAAAACTTAGTGTTTATCAAAGACAAGATATGACTTTAATATTAAAAAGCGAATATATCTCAAATGGTGTTGAAGTACTT
AAAATCCCTAAGGATGTCAAACTAGAGAGGAATAAAACTTTGCACTTTGATCAGGCAGGAGGAAATTCTTCTTTAGAAAA
ACTTGTTTTTCAAACATCTGATGAAAAAAGAGTTACTTATCAATTATATATAGGAAGTGGTCAGTATAAAAAAACAGAAA
GTTAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (1-25)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	100	100	1
comYD	Streptococcus mutans UA159	100	100	1
comYD	Streptococcus gordonii str. Challis substr. CH1	50.388	96.269	0.485
comGD/cglD	Streptococcus mitis NCTC 12261	49.612	96.269	0.478
comGD/cglD	Streptococcus pneumoniae Rx1	49.219	95.522	0.47
comGD/cglD	Streptococcus pneumoniae D39	49.219	95.522	0.47
comGD/cglD	Streptococcus pneumoniae R6	49.219	95.522	0.47
comGD/cglD	Streptococcus pneumoniae TIGR4	48.438	95.522	0.463
comGD/cglD	Streptococcus mitis SK321	48.438	95.522	0.463
comGD	Lactococcus lactis subsp. cremoris KW2	39.394	98.507	0.388