Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYE   Type   Machinery gene
Locus tag   FSA31_RS08955 Genome accession   NZ_CP044492
Coordinates   1784555..1784848 (-) Length   97 a.a.
NCBI ID   WP_002263439.1    Uniprot ID   -
Organism   Streptococcus mutans strain T8     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1779555..1789848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSA31_RS08920 (FSA31_1765) - 1779587..1780249 (-) 663 WP_002263446.1 type II CAAX endopeptidase family protein -
  FSA31_RS08925 (FSA31_1766) - 1780302..1780742 (-) 441 WP_002263445.1 hypothetical protein -
  FSA31_RS08930 (FSA31_1767) - 1780711..1780956 (-) 246 WP_002265894.1 helix-turn-helix transcriptional regulator -
  FSA31_RS08935 (FSA31_1768) - 1781501..1782700 (-) 1200 WP_002263443.1 acetate kinase -
  FSA31_RS08940 (FSA31_1769) comYH 1782759..1783712 (-) 954 WP_002264244.1 class I SAM-dependent methyltransferase Machinery gene
  FSA31_RS08945 (FSA31_1770) comYG 1783767..1784156 (-) 390 WP_002263441.1 competence type IV pilus minor pilin ComGG Machinery gene
  FSA31_RS08950 (FSA31_1771) comYF 1784134..1784568 (-) 435 WP_002274770.1 competence type IV pilus minor pilin ComGF Machinery gene
  FSA31_RS08955 (FSA31_1772) comYE 1784555..1784848 (-) 294 WP_002263439.1 competence type IV pilus minor pilin ComGE Machinery gene
  FSA31_RS08960 (FSA31_1773) comYD 1784820..1785224 (-) 405 WP_002263438.1 competence type IV pilus minor pilin ComGD Machinery gene
  FSA31_RS08965 (FSA31_1774) comYC 1785211..1785525 (-) 315 WP_002263437.1 competence type IV pilus major pilin ComGC Machinery gene
  FSA31_RS08970 (FSA31_1775) comYB 1785525..1786556 (-) 1032 WP_257646399.1 competence type IV pilus assembly protein ComGB Machinery gene
  FSA31_RS08975 (FSA31_1776) comYA 1786492..1787433 (-) 942 WP_002263435.1 competence type IV pilus ATPase ComGA Machinery gene
  FSA31_RS08980 (FSA31_1777) - 1787564..1787947 (-) 384 WP_002263434.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 11001.91 Da        Isoelectric Point: 9.4908

>NTDB_id=390326 FSA31_RS08955 WP_002263439.1 1784555..1784848(-) (comYE) [Streptococcus mutans strain T8]
MVSIKKQKVKAYILLESLVALGLFVTITTLILTQLSHYQERTAKNLQKQEILNLAIMALQTQQDHLSFNGVSVTVVKNQG
ETIVYHDHEEVINLVKK

Nucleotide


Download         Length: 294 bp        

>NTDB_id=390326 FSA31_RS08955 WP_002263439.1 1784555..1784848(-) (comYE) [Streptococcus mutans strain T8]
GTGGTCAGTATAAAAAAACAGAAAGTTAAAGCTTATATTCTTCTAGAAAGTTTAGTTGCTTTGGGGCTTTTCGTAACCAT
CACAACTTTAATTCTTACTCAGTTGAGTCATTATCAGGAAAGAACAGCTAAAAATTTACAAAAACAAGAAATATTGAATT
TAGCAATAATGGCTCTTCAAACTCAGCAAGATCATTTAAGCTTCAACGGCGTCAGTGTTACGGTTGTTAAAAATCAAGGG
GAAACTATAGTCTATCATGATCATGAGGAGGTTATCAATCTTGTTAAAAAGTAA

Domains

Predicted by InterproScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYE Streptococcus mutans UA140

100

100

1
  comYE Streptococcus mutans UA159

100

100

1
  comGE/cglE Streptococcus pneumoniae Rx1

44.444

92.784

0.412
  comGE/cglE Streptococcus pneumoniae D39

44.444

92.784

0.412
  comGE/cglE Streptococcus pneumoniae R6

44.444

92.784

0.412
  comGE/cglE Streptococcus pneumoniae TIGR4

44.444

92.784

0.412
  comGE/cglE Streptococcus mitis NCTC 12261

44.444

92.784

0.412
  comGE/cglE Streptococcus mitis SK321

44.444

92.784

0.412

Multiple sequence alignment