Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   FSC09_RS01250 Genome accession   NZ_CP044455
Coordinates   261053..263188 (+) Length   711 a.a.
NCBI ID   WP_171499848.1    Uniprot ID   -
Organism   Acinetobacter indicus strain B18     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 256053..268188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSC09_RS01230 (FSC09_01235) pilM 258056..259114 (+) 1059 WP_075174946.1 pilus assembly protein PilM Machinery gene
  FSC09_RS01235 (FSC09_01240) pilN 259114..259749 (+) 636 WP_005180516.1 PilN domain-containing protein Machinery gene
  FSC09_RS01240 (FSC09_01245) pilO 259746..260465 (+) 720 WP_127800755.1 type 4a pilus biogenesis protein PilO Machinery gene
  FSC09_RS01245 (FSC09_01250) pilP 260465..260992 (+) 528 WP_045795346.1 pilus assembly protein PilP Machinery gene
  FSC09_RS01250 (FSC09_01255) pilQ 261053..263188 (+) 2136 WP_171499848.1 type IV pilus secretin PilQ Machinery gene
  FSC09_RS01255 (FSC09_01260) aroK 263225..263767 (+) 543 WP_075167858.1 shikimate kinase AroK -
  FSC09_RS01260 (FSC09_01265) aroB 263790..264872 (+) 1083 WP_127800753.1 3-dehydroquinate synthase -
  FSC09_RS01265 (FSC09_01270) - 264885..265721 (+) 837 WP_127800751.1 hypothetical protein -

Sequence

Protein


Download         Length: 711 a.a.        Molecular weight: 76689.92 Da        Isoelectric Point: 5.2215

>NTDB_id=390111 FSC09_RS01250 WP_171499848.1 261053..263188(+) (pilQ) [Acinetobacter indicus strain B18]
MNNLFRQFSMGAVAMAVMQVANAQVSITNIVPMQIPGQGTEIRVMFNGLPPQPAAYQLEQPSRLVLDFDKAQQSLKQASI
PVATREASSVDVSSDAQRARLTVNLAEAGAFTTRVEGNTFILKINSTQAAATPVAVQQTAQGISNIGFQRGAEGEGQVVI
DLAGSNTPVDVQQQGSKIIVRTLGNKIPAHLARRLNVNDFATPVSTIDAQNDGGNGVITIQSAGSYEYMAYQAENKLTIS
LKRPVDKNPFKPRAAQSYTGKKISLDFQDIEVRRVLQLLADFTGINMVAADTVQGNITLRLKDVPWDQALDIILKTKNLD
KRRNGNVIWIAPVAELIKAEEEAKAIAQSVKLAPLQTEYIQLNYAKAADIEKLITDGKNASNSRGGTNSVSGADPLGDSV
GSLLSPRGTVSVDPRTNTLIINDTAQKIDQIRGMIDLLDVSVKQVMIEARIVRATTDFTKEMGVKWGILSQGIMNNNHLL
VGGNDTTLWNLREPEKDDDTGGWKYEIERPQNLNVDLGVTSAGASRIAFGLISLSDFMLDLELSALQADGYGEVISTPKV
LTADKQQAKVASGTQIPYQSAEGGGVNAVSTTEFIDATLSLDVTPSITPDGKVQMNLNITSDSPGAPTPTGQLTINKNSI
NTNVLVDNGETVVLGGIFEQQTANQQTKVPFLGDIPYLGRLFRKDIKSDNKRELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2136 bp        

>NTDB_id=390111 FSC09_RS01250 WP_171499848.1 261053..263188(+) (pilQ) [Acinetobacter indicus strain B18]
ATGAACAATTTGTTCCGTCAGTTTTCAATGGGCGCTGTTGCGATGGCCGTCATGCAAGTGGCCAATGCGCAGGTCAGCAT
TACCAATATTGTACCAATGCAAATTCCAGGACAAGGTACTGAAATTCGTGTCATGTTCAATGGCTTGCCACCTCAGCCTG
CAGCCTATCAGCTTGAGCAGCCATCACGTTTGGTGCTGGATTTTGATAAAGCCCAGCAGAGCTTAAAACAGGCCAGCATT
CCGGTTGCGACCCGGGAAGCCAGCTCGGTTGATGTCAGTTCCGATGCCCAGCGTGCGCGTTTAACGGTTAATCTGGCTGA
AGCGGGTGCTTTTACTACCCGTGTCGAAGGTAATACTTTTATTCTTAAAATTAACAGCACTCAGGCAGCCGCAACACCAG
TAGCTGTACAGCAGACGGCTCAAGGCATATCGAATATCGGCTTTCAGCGTGGTGCAGAAGGGGAAGGTCAGGTGGTAATT
GACCTGGCAGGCAGCAATACCCCGGTCGATGTACAACAGCAAGGCAGTAAAATTATTGTCCGTACCTTGGGTAATAAAAT
TCCTGCACATCTGGCACGCCGTTTAAACGTCAATGATTTTGCCACCCCGGTATCTACCATTGATGCGCAAAATGATGGTG
GCAATGGGGTAATTACTATTCAGTCTGCCGGAAGCTATGAATATATGGCGTATCAGGCAGAAAATAAACTGACCATCAGT
CTGAAACGTCCGGTAGATAAGAACCCGTTCAAACCGCGTGCAGCACAAAGCTATACCGGCAAAAAGATTTCTTTAGATTT
CCAGGATATTGAAGTGCGTCGTGTGCTGCAGTTACTGGCTGATTTTACCGGAATTAACATGGTTGCCGCCGATACGGTAC
AAGGCAATATCACCTTACGTCTCAAAGATGTGCCGTGGGATCAGGCACTAGATATTATTTTAAAAACCAAAAATCTGGAT
AAACGCCGTAACGGCAATGTGATCTGGATTGCACCCGTCGCAGAGCTGATCAAGGCCGAAGAAGAAGCCAAAGCGATTGC
ACAAAGCGTCAAGCTGGCGCCGCTGCAAACCGAATATATCCAGTTAAATTATGCCAAGGCTGCTGATATTGAGAAACTGA
TTACTGATGGTAAAAACGCATCCAATTCTCGTGGCGGCACAAATTCGGTTTCAGGGGCAGATCCACTCGGTGATAGCGTC
GGTAGTCTACTCAGCCCACGTGGTACGGTGTCAGTCGATCCACGAACCAACACCCTGATTATTAATGATACCGCGCAAAA
AATTGACCAGATTCGCGGCATGATTGACTTGCTGGATGTATCGGTGAAACAGGTGATGATTGAAGCGCGTATTGTGCGTG
CCACCACTGACTTCACCAAAGAGATGGGGGTCAAGTGGGGCATCCTGTCACAAGGGATCATGAATAATAACCATCTTCTG
GTCGGTGGTAATGATACCACACTGTGGAATTTACGTGAACCAGAAAAAGATGATGATACGGGCGGTTGGAAGTATGAAAT
TGAACGTCCGCAAAACCTGAATGTCGATTTAGGAGTGACCAGTGCAGGTGCTAGCCGCATTGCCTTTGGTTTAATCAGTT
TATCTGACTTTATGCTGGATTTAGAACTGTCTGCATTACAAGCTGATGGTTATGGTGAAGTAATTTCGACCCCGAAAGTG
CTGACTGCTGACAAGCAGCAGGCCAAAGTGGCTTCAGGTACGCAGATTCCGTATCAGTCTGCTGAAGGTGGTGGTGTCAA
TGCGGTGTCCACCACCGAGTTTATTGATGCTACGCTCAGTCTGGACGTAACGCCAAGCATTACCCCGGATGGTAAAGTGC
AGATGAACCTGAATATCACCAGTGATAGTCCGGGAGCACCAACGCCGACCGGTCAGCTGACGATTAACAAAAACTCGATC
AATACCAATGTACTGGTCGATAATGGTGAAACCGTCGTGCTCGGTGGTATTTTTGAGCAGCAGACAGCCAATCAGCAAAC
CAAAGTGCCATTCTTGGGTGATATTCCGTATTTAGGCCGTTTATTCCGTAAAGATATTAAATCGGACAATAAACGTGAGT
TGCTGATTTTTGTGACACCACGAATTGTTAATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(545-703)

Secretin and TonB N terminus short domain (STN)

(290-332)

AMIN domain (AMIN)

(40-121)

Bacterial type II/III secretion system short domain (Secretin_N)

(358-444)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

76.316

100

0.775
  pilQ Acinetobacter baumannii strain A118

76.177

100

0.774
  comQ Acinetobacter baylyi ADP1

74.37

100

0.747
  pilQ Pseudomonas aeruginosa PAK

40.51

99.297

0.402
  pilQ Legionella pneumophila strain Lp02

38.614

99.437

0.384
  pilQ Legionella pneumophila strain ERS1305867

38.614

99.437

0.384

Multiple sequence alignment