Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   FSC09_RS01230 Genome accession   NZ_CP044455
Coordinates   258056..259114 (+) Length   352 a.a.
NCBI ID   WP_075174946.1    Uniprot ID   A0A6C0XYY7
Organism   Acinetobacter indicus strain B18     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 253056..264114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSC09_RS01215 (FSC09_01220) - 253144..254448 (+) 1305 WP_152342556.1 IS4 family transposase -
  FSC09_RS01220 (FSC09_01225) ponA 254490..257066 (-) 2577 WP_127800954.1 penicillin-binding protein PBP1a -
  FSC09_RS01230 (FSC09_01235) pilM 258056..259114 (+) 1059 WP_075174946.1 pilus assembly protein PilM Machinery gene
  FSC09_RS01235 (FSC09_01240) pilN 259114..259749 (+) 636 WP_005180516.1 PilN domain-containing protein Machinery gene
  FSC09_RS01240 (FSC09_01245) pilO 259746..260465 (+) 720 WP_127800755.1 type 4a pilus biogenesis protein PilO Machinery gene
  FSC09_RS01245 (FSC09_01250) pilP 260465..260992 (+) 528 WP_045795346.1 pilus assembly protein PilP Machinery gene
  FSC09_RS01250 (FSC09_01255) pilQ 261053..263188 (+) 2136 WP_171499848.1 type IV pilus secretin PilQ Machinery gene
  FSC09_RS01255 (FSC09_01260) aroK 263225..263767 (+) 543 WP_075167858.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38957.59 Da        Isoelectric Point: 4.5587

>NTDB_id=390107 FSC09_RS01230 WP_075174946.1 258056..259114(+) (pilM) [Acinetobacter indicus strain B18]
MRRLYRKPSKGLIGVDISSTSVKLLELSVKNDRYWVESYALVPLSEGSVVEKNILNPEAVGDALERAFNLANTPTTAAAL
AIPTSMVISKTIEMDADMTDDEREVQIRMDAEQYIPFPLDEVSLDFEVLPDRLANPNRVNVLLVATRLENVESRCEAIEL
AGLTPKVADVESFAIENAFKVFADTLPMGVNTIGVLDIGHTMTTLSVLKDNKIIYTREQVFGGKQLTQEIQNRYGLSFEE
AGRAKKSRTLPDDYDVEVLEPFLEAVVQQAARSLQFFFSSSQFNEIDHILLAGGNANIPGLAKLLQQKLGYRVTIANPFL
QMGFSSKIDIKRIESDASSLMVACGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=390107 FSC09_RS01230 WP_075174946.1 258056..259114(+) (pilM) [Acinetobacter indicus strain B18]
GTGCGCAGGTTATATCGTAAACCGAGTAAGGGGTTAATAGGTGTAGATATTAGTTCTACTTCTGTTAAGTTATTGGAGCT
CTCTGTAAAGAATGATCGTTACTGGGTGGAAAGTTACGCCTTGGTACCGCTCTCAGAGGGCAGTGTGGTTGAGAAAAATA
TTCTGAATCCTGAAGCTGTAGGGGATGCGCTCGAGCGTGCCTTTAATTTGGCCAATACACCGACAACAGCTGCCGCTTTA
GCGATTCCAACCTCAATGGTAATTAGCAAGACCATTGAGATGGATGCCGATATGACGGATGACGAACGTGAAGTTCAAAT
CCGGATGGATGCAGAGCAATATATTCCTTTCCCATTAGATGAAGTTAGCCTGGACTTTGAGGTGCTGCCTGATCGTCTGG
CCAATCCAAACCGGGTCAATGTTTTGCTGGTGGCGACACGACTGGAAAATGTCGAGAGTCGCTGTGAAGCGATTGAACTG
GCCGGTTTAACCCCAAAAGTGGCAGATGTCGAAAGCTTTGCCATTGAAAATGCCTTTAAAGTCTTCGCCGATACCTTGCC
GATGGGGGTAAATACCATTGGTGTGTTAGACATTGGTCATACTATGACCACGCTGTCGGTACTCAAAGACAATAAAATTA
TCTATACCCGCGAGCAGGTCTTTGGTGGCAAGCAGCTGACCCAGGAAATCCAGAACCGTTATGGTCTGTCTTTTGAAGAA
GCCGGCCGCGCCAAGAAAAGCCGTACCTTGCCAGATGATTATGATGTTGAAGTGTTGGAGCCATTCCTTGAGGCGGTGGT
GCAGCAGGCGGCACGTTCGCTGCAGTTCTTCTTCTCCTCATCGCAGTTTAATGAAATTGACCATATTCTGCTGGCCGGTG
GGAATGCCAATATTCCAGGCCTGGCCAAGCTACTACAGCAAAAACTGGGTTACCGCGTCACCATTGCCAATCCGTTTTTA
CAGATGGGTTTCTCCTCCAAAATTGATATTAAAAGAATTGAAAGCGATGCCTCTTCATTGATGGTGGCATGTGGCTTGGC
ATTGAGGAGTTTTGATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6C0XYY7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

84.091

100

0.841
  comM Acinetobacter nosocomialis M2

84.091

100

0.841
  comM Acinetobacter baylyi ADP1

78.693

100

0.787
  pilM Legionella pneumophila strain ERS1305867

40.96

100

0.412

Multiple sequence alignment