Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HHA37_RS27570 Genome accession   NZ_CP051547
Coordinates   5976917..5978410 (+) Length   497 a.a.
NCBI ID   WP_122359403.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain AA2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5971917..5983410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHA37_RS27540 (HHA37_27575) - 5972039..5972953 (-) 915 WP_003136191.1 fimbrial protein -
  HHA37_RS27545 (HHA37_27580) sutA 5973389..5973706 (-) 318 WP_003096440.1 transcriptional regulator SutA -
  HHA37_RS27550 (HHA37_27585) - 5973784..5974209 (-) 426 WP_003096441.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HHA37_RS27555 (HHA37_27590) - 5974470..5975798 (-) 1329 WP_003109815.1 ammonium transporter -
  HHA37_RS27560 (HHA37_27595) glnK 5975838..5976176 (-) 339 WP_003096476.1 P-II family nitrogen regulator -
  HHA37_RS27565 (HHA37_27600) - 5976616..5976876 (+) 261 WP_003096478.1 accessory factor UbiK family protein -
  HHA37_RS27570 (HHA37_27605) comM 5976917..5978410 (+) 1494 WP_122359403.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HHA37_RS27575 (HHA37_27610) betT 5978535..5980520 (+) 1986 WP_003096496.1 choline BCCT transporter BetT -
  HHA37_RS27580 (HHA37_27615) pchP 5980563..5981612 (-) 1050 WP_003110458.1 phosphorylcholine phosphatase -
  HHA37_RS27585 (HHA37_27620) - 5981763..5982680 (-) 918 WP_003098255.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53069.01 Da        Isoelectric Point: 7.9587

>NTDB_id=385582 HHA37_RS27570 WP_122359403.1 5976917..5978410(+) (comM) [Pseudomonas aeruginosa strain AA2]
MSLAIVHSRAQVGVEAPCVSVEAHLANGLPSLTLVGLPETAVRESKDRVRSALLNAGFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASGQLPGTALDGLECLGELALSGAIRPVRGVLPAALAARDARRVLVVPKENAEEASLASGLTVFAVDHL
LEIAGHLSGQAPLPPYQARGLLRAPFPYPDLAEVQGQAAAKRALLVAAAGAHNLLLSGPPGTGKTLLASRLPGLLPALDE
DEALEVAAIHSVASHVPLRHWPQRPFRQPHHSASAPALVGGGSRPQPGEITLAHQGVLFLDELPEFERKVLEVLREPLES
GEIVIARANGRVRFPARFQLVGAMNPCPCGYLGDPSGRCRCTPEQVQRYRGKLSGPLLDRIDLHVSVLRESTSLQPGHGE
TATAEVSERVGAARQRQLARQGCANAHLDLQAMHRNCALAEADRRWLEAAGERLELSLRALHRILKVARTLADLERIDAI
ERRHLAEALQYRAMTST

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=385582 HHA37_RS27570 WP_122359403.1 5976917..5978410(+) (comM) [Pseudomonas aeruginosa strain AA2]
ATGTCCCTGGCGATTGTCCACAGCCGAGCCCAGGTCGGCGTCGAAGCCCCCTGCGTCAGCGTCGAGGCGCACCTGGCCAA
CGGCCTGCCTTCGCTGACCCTGGTCGGCCTGCCGGAAACCGCGGTGCGCGAGAGCAAGGACCGCGTGCGCAGCGCCCTGC
TCAATGCCGGTTTCGACTTCCCCGCGCGGCGCATCACCCTCAACCTCGCCCCCGCCGACCTACCCAAGGACGGCGGTCGC
TTCGACCTGGCCATCGCACTCGGCATCCTCGCCGCCAGCGGCCAGTTGCCCGGCACCGCCCTCGACGGCCTGGAGTGCCT
CGGCGAACTGGCCCTGTCCGGGGCGATCCGGCCAGTGCGAGGCGTATTGCCGGCCGCGCTGGCGGCGCGCGACGCAAGGC
GCGTTCTGGTGGTACCGAAGGAAAATGCCGAAGAGGCCAGCCTGGCCAGCGGGCTGACGGTGTTCGCCGTGGACCACCTG
CTGGAGATCGCCGGACACCTCTCCGGCCAGGCCCCGCTGCCGCCCTACCAGGCCCGCGGCCTGCTCCGCGCGCCCTTCCC
TTATCCAGACCTGGCCGAGGTCCAGGGCCAGGCCGCCGCCAAGCGCGCCCTGCTGGTGGCCGCCGCCGGCGCGCACAACC
TGTTGCTCAGCGGCCCGCCGGGCACCGGCAAGACCCTCCTGGCCAGCCGCCTGCCCGGCCTGCTGCCGGCGCTCGACGAG
GACGAAGCCCTGGAGGTCGCGGCGATCCATTCGGTGGCCAGCCACGTCCCCCTCAGGCACTGGCCGCAGCGACCGTTCCG
CCAGCCGCACCACTCCGCCTCCGCGCCGGCCCTGGTCGGCGGCGGCAGCCGCCCGCAGCCGGGCGAGATCACCCTGGCGC
ACCAGGGCGTGCTGTTCCTCGACGAACTGCCGGAGTTCGAGCGCAAGGTCCTGGAGGTCCTGCGCGAGCCGCTGGAAAGC
GGCGAGATCGTCATTGCCCGGGCCAACGGCCGGGTACGTTTCCCGGCGCGCTTCCAACTGGTGGGGGCGATGAATCCCTG
TCCCTGTGGCTACCTCGGCGATCCCAGTGGCCGCTGCCGCTGCACCCCGGAACAGGTCCAGCGCTACCGGGGCAAGCTGT
CCGGACCGCTGCTCGATCGCATCGACCTGCACGTCAGCGTGCTCCGCGAAAGCACCAGCCTGCAGCCAGGACACGGCGAA
ACCGCTACCGCCGAGGTCAGCGAACGGGTGGGCGCCGCACGGCAACGGCAACTGGCCCGCCAGGGCTGCGCCAATGCCCA
TCTCGATCTCCAGGCGATGCACCGCAATTGTGCACTCGCCGAAGCGGACCGCCGCTGGCTGGAGGCTGCCGGAGAGCGCC
TGGAACTTTCCTTGCGCGCCTTGCATCGCATACTCAAGGTGGCCCGGACGCTGGCCGACCTGGAGCGCATCGATGCCATC
GAACGCCGGCACCTGGCGGAAGCCCTGCAGTATCGGGCAATGACCTCCACGTGA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.942

100

0.569
  comM Haemophilus influenzae Rd KW20

54.99

100

0.565
  comM Vibrio cholerae O1 biovar El Tor strain E7946

56.539

100

0.565
  comM Vibrio cholerae strain A1552

56.539

100

0.565
  comM Glaesserella parasuis strain SC1401

54.98

100

0.555
  comM Acinetobacter baylyi ADP1

53.414

100

0.535
  comM Legionella pneumophila str. Paris

49.9

100

0.501
  comM Legionella pneumophila strain ERS1305867

49.9

100

0.501
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.669

100

0.467
  comM Helicobacter pylori 26695

39.044

100

0.394