Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   F0H33_RS14950 Genome accession   NZ_CP043500
Coordinates   3440906..3442165 (+) Length   419 a.a.
NCBI ID   WP_058364253.1    Uniprot ID   -
Organism   Xanthomonas translucens pv. undulosa strain P3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3435906..3447165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0H33_RS14925 (F0H33_14925) - 3436809..3436991 (+) 183 WP_003466380.1 YhfG family protein -
  F0H33_RS14930 (F0H33_14930) - 3436988..3437440 (+) 453 WP_230811680.1 Fic family protein -
  F0H33_RS14935 (F0H33_14935) pilB 3437615..3439351 (-) 1737 WP_058363696.1 type IV-A pilus assembly ATPase PilB Machinery gene
  F0H33_RS20985 - 3439633..3439845 (+) 213 WP_230939645.1 hypothetical protein -
  F0H33_RS14945 (F0H33_14945) - 3440091..3440525 (-) 435 WP_081045858.1 pilin -
  F0H33_RS14950 (F0H33_14950) pilC 3440906..3442165 (+) 1260 WP_058364253.1 type II secretion system F family protein Machinery gene
  F0H33_RS14955 (F0H33_14955) - 3442172..3443035 (+) 864 WP_003466396.1 prepilin peptidase -
  F0H33_RS14960 (F0H33_14960) coaE 3443049..3443669 (+) 621 WP_003466399.1 dephospho-CoA kinase -
  F0H33_RS14965 (F0H33_14965) - 3443796..3445130 (-) 1335 WP_003477107.1 HAMP domain-containing sensor histidine kinase -
  F0H33_RS14970 (F0H33_14970) - 3445123..3445800 (-) 678 WP_003466405.1 response regulator transcription factor -
  F0H33_RS14975 (F0H33_14975) - 3445899..3446093 (-) 195 WP_230940922.1 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45403.54 Da        Isoelectric Point: 10.1709

>NTDB_id=384628 F0H33_RS14950 WP_058364253.1 3440906..3442165(+) (pilC) [Xanthomonas translucens pv. undulosa strain P3]
MSATRSAVSKEPVARNTSQQVPFVWEGTDKRGIKMKGEQTAKNANLLRAELRRQGITPSVVKPKPKPLFGAAGSKISTKD
IAFFSRQMATMMKSGVPIVGSLEIIGSGHKNPRMKKMVGQVRTDIEGGSSLYEAISKHPVQFDELYRNLVKAGEGAGVLE
TVLETVATYKENTEALKGKIKKALFYPAAVMGVALLVSSILLVWVVPQFEDVFKGFGAELPAFTQMIVAASRFMVAYWLL
LLIVLVGSIVGFIFAYKRSPSMQHGMDKLILKVPIIGQIIHNSSVARFSRTLGVTFRAGVPLVEALDIVAGATGNSVYEK
AVLRMRDDVSVGYPVNVAMKQANLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIV
GGMVVGMYLPIFKLASVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=384628 F0H33_RS14950 WP_058364253.1 3440906..3442165(+) (pilC) [Xanthomonas translucens pv. undulosa strain P3]
ATGTCCGCAACTCGTAGCGCAGTATCCAAAGAACCCGTCGCACGCAATACCAGCCAGCAGGTCCCGTTCGTCTGGGAAGG
GACGGACAAGCGCGGCATCAAGATGAAGGGCGAGCAGACCGCCAAGAACGCCAACCTGCTGCGTGCGGAATTGCGCCGCC
AGGGCATCACCCCGTCGGTGGTCAAGCCGAAACCCAAGCCCCTGTTCGGCGCCGCCGGCAGCAAGATCAGTACCAAGGAC
ATTGCCTTCTTCAGCCGCCAGATGGCGACCATGATGAAGTCGGGCGTCCCCATCGTGGGATCGCTGGAAATCATCGGCAG
CGGGCACAAGAACCCGCGCATGAAGAAGATGGTGGGCCAGGTCCGCACCGACATCGAAGGCGGCTCGTCGCTCTATGAAG
CGATCAGCAAGCATCCGGTCCAGTTCGACGAACTCTACCGCAACCTGGTCAAGGCCGGCGAAGGCGCCGGCGTACTCGAA
ACCGTGCTGGAGACGGTAGCCACCTACAAGGAAAACACCGAGGCGCTGAAGGGCAAGATCAAGAAAGCCTTGTTCTATCC
GGCCGCGGTCATGGGTGTGGCGCTGCTGGTCAGCTCGATCTTGCTGGTGTGGGTGGTCCCGCAATTCGAGGATGTCTTCA
AAGGGTTTGGCGCAGAGTTACCCGCATTCACTCAGATGATCGTCGCCGCTTCACGCTTTATGGTGGCTTATTGGTTGCTC
CTGCTGATCGTGCTGGTTGGCAGCATCGTCGGCTTCATCTTCGCCTACAAGCGCTCGCCGTCGATGCAGCACGGCATGGA
CAAGTTGATTCTGAAGGTGCCGATCATCGGCCAGATCATTCACAACAGCTCCGTGGCCCGCTTCTCGCGGACACTGGGCG
TCACCTTCCGCGCCGGCGTCCCGTTGGTGGAAGCGCTGGACATCGTCGCCGGCGCCACCGGCAACAGCGTCTACGAAAAG
GCCGTACTGCGCATGCGTGACGATGTCTCGGTGGGCTACCCGGTCAACGTGGCGATGAAGCAGGCCAACCTGTTTCCGCA
CATGGTCATCCAGATGACCGCCATCGGCGAAGAAGCCGGTGCGCTGGATGCGATGCTGTTCAAGGTGGCCGAGTACTTCG
AGCAGGAAGTGAACAATGCGGTCGATGCGTTGAGCAGCCTGCTGGAACCGCTGATCATGGTGTTCATTGGTACCATCGTC
GGCGGCATGGTCGTCGGCATGTATCTGCCCATCTTCAAGCTGGCTTCCGTCGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.283

94.511

0.504
  pilC Legionella pneumophila strain ERS1305867

51.485

96.42

0.496
  pilC Acinetobacter baumannii D1279779

50.735

97.375

0.494
  pilC Acinetobacter baylyi ADP1

50.49

97.375

0.492
  pilC Vibrio cholerae strain A1552

42.222

96.659

0.408
  pilG Neisseria gonorrhoeae MS11

42.462

94.988

0.403
  pilG Neisseria meningitidis 44/76-A

41.855

95.227

0.399
  pilC Vibrio campbellii strain DS40M4

39.798

94.749

0.377

Multiple sequence alignment