Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   HB760_RS04170 Genome accession   NZ_CP050463
Coordinates   887775..888401 (+) Length   208 a.a.
NCBI ID   WP_005430931.1    Uniprot ID   A0ABQ5Y6E9
Organism   Vibrio campbellii strain LJC015     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 882775..893401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB760_RS04160 (HB760_04130) - 884031..885836 (-) 1806 WP_256113579.1 ATP-binding protein -
  HB760_RS04165 (HB760_04135) tig 886361..887668 (+) 1308 WP_255983890.1 trigger factor -
  HB760_RS04170 (HB760_04140) clpP 887775..888401 (+) 627 WP_005430931.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  HB760_RS04175 (HB760_04145) clpX 888473..889753 (+) 1281 WP_005529912.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  HB760_RS04180 (HB760_04150) lon 889884..892235 (+) 2352 WP_255897971.1 endopeptidase La -
  HB760_RS04185 (HB760_04155) - 892427..892699 (+) 273 WP_005430934.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 22979.25 Da        Isoelectric Point: 4.7297

>NTDB_id=380511 HB760_RS04170 WP_005430931.1 887775..888401(+) (clpP) [Vibrio campbellii strain LJC015]
MSYQEKNAMSPIIDALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSP
GGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIK
QKLNNLLAEHTGQPLEVIERDTDRDNFMSADQAVEYGIVDAVLSHRGE

Nucleotide


Download         Length: 627 bp        

>NTDB_id=380511 HB760_RS04170 WP_005430931.1 887775..888401(+) (clpP) [Vibrio campbellii strain LJC015]
ATGAGCTACCAAGAAAAAAACGCAATGTCGCCAATTATTGACGCGCTAGTGCCAATGGTGGTTGAACAAACTTCCCGCGG
CGAACGCTCTTACGACATTTACTCGCGTCTGCTTAAAGAGCGCGTGATCTTTTTAACTGGTCAAGTGGAAGACCACATGG
CAAACCTTGTCGTGGCTCAACTACTTTTCCTAGAATCTGAAAATCCAGATAAAGATATTTTCCTATACATCAACTCACCA
GGCGGCAGCGTAACAGCAGGTATGTCTATCTACGACACCATGCAGTTCATCAAGCCAAATGTAAGCACAGTATGTATGGG
TCAAGCTTGCTCTATGGGTGCGTTCCTGCTTGCAGGTGGTGCGCCAGGTAAGCGTTACGTTCTGCCTAATTCACGTGTGA
TGATCCACCAACCACTGGGTGGCTTCCAAGGTCAAGCTTCTGATATCCAAATTCATGCTCAGGAAATCCTGACCATCAAG
CAGAAGCTAAACAACCTATTAGCAGAACATACTGGCCAGCCTCTTGAAGTGATTGAGCGCGATACTGATCGTGATAACTT
CATGTCGGCAGATCAGGCAGTAGAATACGGTATTGTGGATGCAGTGTTGAGCCACCGCGGCGAGTAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(26-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

68.947

91.346

0.63
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.83

90.385

0.577
  clpP Streptococcus pneumoniae Rx1

53.646

92.308

0.495
  clpP Streptococcus pneumoniae D39

53.646

92.308

0.495
  clpP Streptococcus pneumoniae R6

53.646

92.308

0.495
  clpP Streptococcus pneumoniae TIGR4

53.646

92.308

0.495
  clpP Streptococcus thermophilus LMG 18311

52.083

92.308

0.481
  clpP Streptococcus thermophilus LMD-9

52.083

92.308

0.481
  clpP Lactococcus lactis subsp. cremoris KW2

52.083

92.308

0.481
  clpP Streptococcus mutans UA159

51.295

92.788

0.476
  clpP Streptococcus pyogenes JRS4

51.042

92.308

0.471
  clpP Streptococcus pyogenes MGAS315

51.042

92.308

0.471
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

50.521

92.308

0.466

Multiple sequence alignment