Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   FXO11_RS04145 Genome accession   NZ_CP043042
Coordinates   932677..934737 (+) Length   686 a.a.
NCBI ID   WP_202980284.1    Uniprot ID   -
Organism   Marinobacter fonticola strain CS412     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 927677..939737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXO11_RS04125 pilM 929816..930883 (+) 1068 WP_148861703.1 pilus assembly protein PilM Machinery gene
  FXO11_RS04130 - 930883..931449 (+) 567 WP_148861704.1 PilN domain-containing protein -
  FXO11_RS04135 - 931446..932057 (+) 612 WP_148861705.1 type 4a pilus biogenesis protein PilO -
  FXO11_RS04140 - 932060..932611 (+) 552 WP_148861706.1 pilus assembly protein PilP -
  FXO11_RS04145 pilQ 932677..934737 (+) 2061 WP_202980284.1 type IV pilus secretin PilQ Machinery gene
  FXO11_RS04150 aroK 934870..935436 (+) 567 WP_148861708.1 shikimate kinase AroK -
  FXO11_RS04155 aroB 935429..936517 (+) 1089 WP_148861709.1 3-dehydroquinate synthase -
  FXO11_RS04160 - 936547..938262 (+) 1716 WP_148861710.1 SPOR domain-containing protein -

Sequence

Protein


Download         Length: 686 a.a.        Molecular weight: 73570.38 Da        Isoelectric Point: 4.2262

>NTDB_id=380278 FXO11_RS04145 WP_202980284.1 932677..934737(+) (pilQ) [Marinobacter fonticola strain CS412]
MFRKFAVMFGMAALGMFSGLAHAVSLNDVDFTSLPGDGTEVTLTFDGTPPQPTGYTIERPARIAVDLRNTQSALESRSVS
LGGGNAQSMTVVETDDRTRLIFNLVELVPYTTNVSGNTVTLRIGGDAGGSASAPASASTSSAPVASGRDAITNVDFRRGS
NGEGRIIVTMSDPTIPVDLSETGGRIRLVMDEAQVPEQLRRRLDVTDFATPVTRVDTFMQGDDAVVEIRPQGNYDYLAYQ
ADNQFTVSVEPLTEEEAESRRDEKFPYSGEKLSLNFQDIEVRSVLQLIADFTGLNLVASDTVSGSITLRLQNVPWDQALD
LILKTKGLDKRQIGNVLLVAPADEIAARERLELETSKQIAELAPVRLDIIQVNYAKAGDIVALVQADAELISDRGFISSD
ARTNTISVRETAEKLEEIRRLVNTWDIPVRQVSIEARIVRAQTNVAESLGIRWGGAGYDVSGNNVFSVGGSQSAVGEARD
AAGGGSGDITFPGALAVDLGVTANGASSFAFGWASDDFLVDLELSALETDGKAEVVSQPRVVTADRQTASIKSGEEIPYQ
EASSSGATSVSFKEAVLSLEVTPQITPDNKIIMDLVVNQDSRGEVTAGIPSINTNEVTTQVLVGDGETVVLGGIFQSEVS
TNITKTPFLGDIPYVGRLFKRTENIDERSELLIFITPTIMRSELIN

Nucleotide


Download         Length: 2061 bp        

>NTDB_id=380278 FXO11_RS04145 WP_202980284.1 932677..934737(+) (pilQ) [Marinobacter fonticola strain CS412]
ATGTTCAGAAAATTCGCAGTAATGTTCGGCATGGCCGCACTCGGCATGTTTTCGGGACTGGCCCATGCTGTCAGCCTGAA
TGATGTCGATTTTACGTCGCTTCCTGGCGATGGTACCGAGGTAACCTTGACCTTTGACGGCACGCCGCCTCAGCCCACGG
GCTACACCATAGAGCGCCCGGCACGTATCGCTGTAGACCTGCGTAACACGCAAAGCGCCCTTGAGAGCCGAAGTGTTTCT
CTGGGGGGCGGTAACGCCCAAAGCATGACCGTGGTCGAAACCGACGATCGGACTCGCCTGATATTCAATCTCGTGGAATT
GGTGCCCTATACCACGAACGTATCGGGTAACACCGTGACCCTCAGGATCGGTGGCGATGCCGGTGGGTCAGCGTCTGCCC
CGGCATCGGCGTCAACATCGTCAGCGCCTGTCGCCTCCGGGCGTGACGCGATCACCAATGTGGACTTCCGTCGGGGTTCG
AACGGCGAAGGCCGGATTATCGTCACGATGAGCGATCCCACTATCCCCGTCGATCTGTCGGAAACAGGCGGTCGGATTCG
GCTGGTGATGGATGAAGCCCAAGTGCCTGAGCAGCTGCGTCGTCGTCTGGATGTGACGGATTTCGCAACGCCCGTAACCC
GAGTCGATACGTTTATGCAGGGTGACGATGCGGTTGTGGAGATTCGCCCTCAAGGCAACTATGACTACCTGGCCTATCAG
GCGGACAACCAGTTTACGGTCAGTGTGGAGCCGCTGACGGAAGAAGAAGCCGAAAGCCGTCGTGACGAGAAATTCCCGTA
TAGCGGTGAAAAGCTCTCTCTGAACTTCCAGGATATTGAAGTCCGTTCAGTTCTTCAGCTGATCGCTGACTTCACCGGGC
TGAACCTCGTAGCCAGCGATACCGTCAGCGGCAGCATCACGCTGCGTCTGCAGAACGTGCCGTGGGATCAGGCACTGGAC
CTCATTCTGAAGACTAAAGGGCTCGACAAGCGTCAGATCGGTAACGTACTGCTGGTTGCTCCGGCGGACGAGATTGCCGC
GCGTGAGCGTCTGGAGCTGGAAACATCCAAACAGATTGCGGAGTTGGCGCCTGTACGCCTGGATATTATTCAGGTGAATT
ACGCCAAGGCAGGGGATATTGTCGCTCTGGTTCAGGCCGATGCGGAGTTGATTTCCGACCGGGGCTTCATTTCATCCGAT
GCGCGTACTAACACTATTAGCGTGAGGGAGACGGCTGAGAAGCTTGAGGAAATTCGACGCCTGGTTAATACCTGGGACAT
TCCTGTGCGCCAGGTCTCCATCGAAGCGCGTATCGTACGCGCTCAGACCAACGTGGCCGAAAGCCTGGGTATTCGTTGGG
GCGGTGCCGGGTACGATGTGAGCGGCAATAACGTGTTTTCCGTCGGCGGCTCCCAGAGTGCTGTTGGCGAAGCTCGCGAT
GCGGCCGGCGGCGGATCCGGAGACATTACTTTCCCCGGCGCTTTGGCCGTAGACCTGGGCGTAACCGCGAATGGCGCTTC
GTCTTTTGCCTTTGGTTGGGCGAGCGATGACTTCTTGGTTGACCTGGAATTGTCAGCGCTTGAAACCGATGGCAAAGCCG
AAGTCGTCTCCCAGCCGCGTGTCGTTACTGCTGATCGCCAAACAGCGTCGATTAAATCCGGTGAAGAGATTCCATACCAG
GAAGCGTCATCAAGCGGTGCAACGTCTGTATCCTTTAAAGAGGCTGTGTTGTCTCTCGAGGTAACTCCGCAAATAACCCC
TGACAACAAGATCATTATGGATCTCGTGGTCAATCAGGACTCCAGGGGCGAAGTAACCGCGGGCATACCTTCTATTAACA
CTAACGAGGTGACAACCCAGGTGCTGGTCGGTGACGGAGAAACGGTTGTTCTGGGGGGTATTTTCCAGTCAGAGGTATCG
ACCAACATTACCAAGACGCCGTTCCTTGGTGATATCCCTTACGTTGGACGTCTTTTCAAGAGAACCGAAAACATCGACGA
GCGTAGCGAATTACTTATCTTCATTACGCCGACGATCATGCGCAGCGAGCTCATTAACTAG

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(369-431)

Secretin and TonB N terminus short domain (STN)

(295-341)

AMIN domain (AMIN)

(36-120)

Bacterial type II and III secretion system protein (Secretin)

(526-680)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

52.809

100

0.548
  pilQ Acinetobacter baumannii D1279779

41.644

100

0.443
  pilQ Acinetobacter baumannii strain A118

41.644

100

0.443
  comQ Acinetobacter baylyi ADP1

41.737

100

0.434
  pilQ Legionella pneumophila strain ERS1305867

41.343

97.668

0.404
  pilQ Legionella pneumophila strain Lp02

41.194

97.668

0.402

Multiple sequence alignment